Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13 179 4e-40 seq46 105 7e-18 seq69 86.0 6e-12 >seq13 Length=9188118 Score = 179 bits (198), Expect = 4e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || |||||||| | ||||||||||||||||| || || | ||||| ||||||| Sbjct 3474382 CCTCATCTCTGGAAATCAATTCGTTGCTGAAAGTCAGCCCAGGTAGAAGGCCACGTTTTT 3474441 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| ||||| |||||||||||||| || || |||| ||||||||||| || |||| Sbjct 3474442 TCATCCAGAATATCGCGGCGAAACTGCCGGAGAAAAAGATTCCCTCGACGGCGGCAAAAG 3474501 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 |||| | ||||||||||| || |||| | ||| | |||||| || |||||||| | Sbjct 3474502 CCACGACTCGCTCGCCGAAGGTCGCTTTATCGCTTGAGATCCATGACAATGCCCATTCTG 3474561 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 |||| | || || ||| ||| |||||||| || || |||| Sbjct 3474562 CCTTCTTCTTAACACACTCCATGGTTTCGATTGCATTGAACA 3474603 Score = 104 bits (114), Expect = 2e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 133148 TCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207 |||||| || | ||| | ||| || ||||| || ||||||||||| || || | | Sbjct 3474702 TCTCTTTCGGGTCACGGATGTAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATAT 3474761 Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267 | || || ||||| ||||| ||||| || |||| ||| || ||| || |||||||||| Sbjct 3474762 TTTCTATTGCGATCTGAAAACCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAG 3474821 Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 || || ||||| |||||||| || || || ||||| || |||||||| || Sbjct 3474822 AAAACCGTTCGACAAGATTTTCATTTACAATCCCGTCCGATGCAGCGAAAAATGC 3474876 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATAC 133441 |||| || || || || || || || ||||||||||| || ||||| ||||||||||| | Sbjct 3474992 CCTTTGAAAGATCGACTTCTTCTACTGTCCAAAACGATGCTTCGGCCTTTTTGTACATTC 3475051 Query 133442 TCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACA 133501 |||| ||||| || | || ||||| || ||||||| | |||||| ||||| | | Sbjct 3475052 TCCATATGTCGTGGTACTCGATCGGAAACATGACAAACCTCCTGGGGTTGTCGCGAAGAA 3475111 Query 133502 GCGGCTCC 133509 |||||||| Sbjct 3475112 GCGGCTCC 3475119 >seq46 Length=4728336 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || |||||||||||||| |||| |||||| | | Sbjct 1480143 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACTCTCGAAGTCGAGCCATCA 1480084 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| | |||| ||||||| || ||||| ||||||||| | || || Sbjct 1480083 GATACCATTGAAAACG-TAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGATCA 1480025 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || ||||||| | || ||||| || ||||| || | || || ||| ||| ||||| Sbjct 1480024 GCAAAGGCTCATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACACTCTCCGATTACAA 1479965 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || || || ||| | || || || | || ||| | | |||| |||| Sbjct 1479964 TATTCAGAAAGAATCTACTCTCCACCTCGTACTGAGACTCCGAGGAGGCC 1479915 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || || || ||||| | || || ||||||||||| | || || ||| | Sbjct 1481971 AACAATGCAGATCTTTGTGAAAACTTTGACCGGAAAAACCATCACATTGGAAGTTGAGCC 1481912 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | || | | | | | || | ||||||| |||||||| || | ||||||| | Sbjct 1481911 TTCAGATACAATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGTA-TCCCGCCAG 1481853 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 ||||||| |||| |||| ||| ||||| || || || || | | || ||| || | Sbjct 1481852 ACCAACAAAGGCTGATTTTCGCTGGCAAGCAACTTGAGGATGGTAGAACTCTCTCGGATT 1481793 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| ||||||||| |||| ||||| ||||| || ||| | ||||| || Sbjct 1481792 ATAACATTCAAAAGGAATCGACTCTGCACTTGGTCCTCCGTCTCAGAGGTGG 1481741 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || || || || ||||| | || || ||| | Sbjct 1570026 AAAATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACAATCACTTTGGAAGTTGAGCCA 1570085 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | |||| ||||||| ||||| || ||||||||| | ||| Sbjct 1570086 TCGGACACCATTGACAATGTCAAAGCTAAAATCCAAGACAAGGAAGGAATTCCCCCAGAC 1570145 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | | || | ||| || || ||||| || || | || || || |||||| Sbjct 1570146 CAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGTACGCTTTCTGACTAC 1570205 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| ||| | || || || | || || | |||||||| || Sbjct 1570206 AACATCCAAAAAGAATCCACCCTCCACCTTGTTTTGAGGTTGAGAGGAGG 1570255 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||||||||| || | || |||||||||||||| | || ||||| | || Sbjct 1481055 ATGCAAATATTCGTAAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTCGAACCATCC 1480996 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | || || | || ||||| || || || | || ||| Sbjct 1480995 GACACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1480936 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || |||||| |||| || | ||||| || |||||||| Sbjct 1480935 CAGAGGTTAATCTTCGCTGGAAAACAGTTGGAAGATGGACGCACTCTTTCGGACTACAAT 1480876 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || | || || | ||||||| || Sbjct 1480875 ATTCAAAAAGAATCCACCCTTCACCTCGTTTTGAGGCTGAGAGGAGG 1480829 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || || | || Sbjct 1570257 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAACCATCC 1570316 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || ||||||||| | ||||| Sbjct 1570317 GATACCATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 1570376 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || || || ||||| || || | || || || ||||||||| Sbjct 1570377 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTACAAC 1570436 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||| | || || || |||||||| | | ||||| ||| Sbjct 1570437 ATCCAAAAAGAATCAACCCTCCACTTGGTGCTTAGGCTTAGAGGAGGC 1570484 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || || || |||||| |||| |||||| | | Sbjct 1480371 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACAATCACCCTCGAAGTCGAGCCATCT 1480312 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || || | || || || || || || | ||||| Sbjct 1480311 GACACCATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAAGGGATCCCTCCAGACCAG 1480252 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| || || || || |||| |||| ||||| || || |||||| Sbjct 1480251 CAGAGGTTAATTTTTGCTGGAAAGCAATTGGAAGACGGACGCACACTTTCGGATTACAAC 1480192 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| | || || | | ||||||||| Sbjct 1480191 ATCCAGAAAGAATCCACTCTTCATCTTGTCTTGAGGCTCAGAGGCGGC 1480144 >seq69 Length=2547145 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || |||||||| || |||||| | || |||||| Sbjct 1551696 AAGATGCAGATTTTTGTGAAGACCCTAACGGGCAAGACAATCACCCTTGAGGTCGAGCAG 1551637 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| || |||| || || ||||| || || | ||| Sbjct 1551636 TCTGACACAATTGAAAATGTCAAAGCCAAGATCCAAGATAAGGAGGGTATCCCACCGGAC 1551577 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||| || | |||| ||| || || ||||| || |||| | || || |||||| Sbjct 1551576 CAACAGAGGTTGATTTTCGCCGGGAAGCAGCTCGAAGACGGCAGGACTCTTTCGGACTAC 1551517 Query 38421 AACATCCA-AAAGG 38433 |||||||| ||||| Sbjct 1551516 AACATCCAGAAAGG 1551503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164034471680