Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq89 96.9 5e-15 >seq89 Length=3091062 Score = 96.9 bits (106), Expect = 5e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 27988 AAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAG-AATTAAATCTAACGGC 28046 || |||||||||| |||||| |||||||||| | |||| ||| |||| |||| || Sbjct 1506358 AACGTACGAGAAATAACATCTAATTGTTGTTCTCGTGTTAATTTAATGAAAT-TAACTGC 1506416 Query 28047 ATAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATCTTC 28106 ||| ||||| || || || || | ||||||||||| ||| ||| | ||||||||| Sbjct 1506417 ATAGCCAGAAACACGTATAGTTAGTTGTGGGTATTCTTCAGGATGATCCATTGCATCTAA 1506476 Query 28107 TAAAGTTTCTTTATTCAAGACATTTACATTTAAATGTTGACC 28148 || || ||| || ||||| |||| |||||||| || || Sbjct 1506477 CAATGTGTCTCGGTTAAAGACGTTTATGTTTAAATGATGGCC 1506518 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/166 (72%), Gaps = 9/166 (5%) Strand=Plus/Plus Query 112209 TTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCGCTGGTTCGAATCCAGC 112268 ||||||||||||| ||||||| | ||| ||| | ||||| |||||||| ||| Sbjct 1468430 TTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCAGTGGTTCGAGCCCACT 1468488 Query 112269 ACGGCGCACCAAAATT-------CGGGGATGTGGTGAAATTGGCAGACACACCAGATTTA 112321 | ||| ||||| ||| || || ||||| | ||||||||||| ||| ||| ||| Sbjct 1468489 ATGGCTCACCATTATTTTAATATCGCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTA 1468548 Query 112322 GGTTCTGGCG-CTTATAGCGTGACGGTTCGAGTCCGTCCATCCCCA 112366 || ||| ||| |||| ||||| ||||||| ||| | || || || Sbjct 1468549 GGATCTAGCGCCTTACGGCGTGGGGGTTCGACTCCCTTCACCCGCA 1468594 Score = 86.0 bits (94), Expect = 9e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 29757 CAAGAATGAACGACAACCCATGGGGGATTTATAAGAACCTGTGACCTTTACCACTTGATC 29816 ||| || |||||||||||||| || | |||| || |||| | | |||| || ||| Sbjct 556864 CAAAAACGAACGACAACCCATCGGAGCTTTAAAATCACCTAATATTTCTACCGTTTTATC 556805 Query 29817 GTAACTCATAATATCCGGATATATACGCTTAGACGAACACTCAAGAGCAAGTTGTTTTAT 29876 ||| ||| |||||| ||||| || | |||| || ||||| | || | ||||||||| Sbjct 556804 ATAATTCAAAATATCAGGATACATTCTTTTAGTAGAGCACTCTAATGCTAATTGTTTTAT 556745 Query 29877 ATCGTAATGAGGATCCCAAGGATTCAGATTAAGACCGTCTTTAAGAGTGAATACAAGTTT 29936 ||| |||| ||||| | | | | ||| | || | ||||| | || |||||||| Sbjct 556744 ATCATAATTCGGATCTTTCGAACTAAAATTCACGCCTTTTTTAATTGAAAACACAAGTTT 556685 Query 29937 AGGAAATACAGCAGT 29951 || || | ||||| Sbjct 556684 TGGGAAGATGGCAGT 556670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752591610600880