Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq105 114 1e-20 seq13 114 1e-20 seq61 111 2e-19 >seq105 Length=1502237 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| || || ||||| | ||||| |||||||| ||| |||||||||||||||| ||| Sbjct 285099 TTATTGCCACCCTGATCCACATATCGAGCAGTATTATTAAAAACTCTTAACATTGGCACA 285040 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA-CT 48472 | || || || || ||||| ||||| | ||| |||| || | || | ||| | | Sbjct 285039 AGTCCGTTAGAGATGCCATTTGTTCCAGCAATTAAACTGCCTTTTGCCCGAATACAATGT 284980 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 | || ||| || |||||||| || |||| || || | ||| || |||| | ||||| Sbjct 284979 ACGTG-AATTCCAATACCACCAGCAGTTTTTGAAATCAACGCAGACTGTTTTAATGTATC 284921 Query 48533 ATAAATTCCTTCTATACTATCATCT 48557 | | || ||||| || ||||||||| Sbjct 284920 AAAGATACCTTCGATGCTATCATCT 284896 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||||||||| ||||| | | || || ||| | || || ||||| | |||| Sbjct 287923 TGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAAAGAT 287864 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||| || |||||||||||||| | || | || | | | Sbjct 287863 TCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAGGGAA 287804 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 || || || |||| ||| ||| | ||||| ||||| ||||| ||| Sbjct 287803 TTCCTAACACCATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGATCAGAT 287744 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAAT 47539 ||| || ||| | ||| ||||| | ||| Sbjct 287743 GGAGTCACTCCCCACATATCGTATTGCAAAAT 287712 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 ||||| ||| ||||||||| || || || ||| | || || | ||||||||| | Sbjct 290399 TCCATGCATGGAAATGCATCGATGTCAACTTTCCGTAATTTGGCTCAGCAATATGAATGT 290340 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || ||||| || || ||||| || |||||||| | ||||||| Sbjct 290339 TCAAAGACTGCGATTGGTCAATGAACGCTCCTCTGTCTGCTGCCATTTGTAAAATAGTTT 290280 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAAT 47200 | ||||| ||||||||||||||||| ||||| Sbjct 290279 TCTGTGGGATCTCCCATACTGTTTTGTAAAT 290249 >seq13 Length=9188118 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||| ||||| ||||||||||| || |||||||| ||||| ||||| || ||||| Sbjct 3474743 TACATTTCGGAATGGATATTTTCTATTGCGATCTGAAAACCGTAGAAACACCTCGCTTCA 3474802 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 || | || ||||| | |||| | |||||| | ||||||||| || || || || Sbjct 3474803 GTCACTTGGACTTCTTGAGAAAACCGTTCGACAAGATTTTCATTTACAATCCCGTCCGAT 3474862 Query 19375 GCTGCAAAAAATGCTAATACATG 19397 || || ||||||||||| ||||| Sbjct 3474863 GCAGCGAAAAATGCTAAAACATG 3474885 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835 |||||| | || |||||||| || ||||| | ||||| ||| ||||| | |||||| | Sbjct 3474123 TAATTCGACGAGGAGTCTATCTGCAACAAACTCTATATACTGT-TTCATGAGATCACAGT 3474181 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 ||||||| || | ||| || ||||| || ||||| || ||||| || || | || | Sbjct 3474182 TCATTCCGATCATAGCAACTGGGAGTGCTTCGGTAAGGAACTCTTGCTCGATGGTAACAG 3474241 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACA 18955 | || | | || || | |||| || | | ||| | || | |||||| |||| Sbjct 3474242 CGTCAGCCACGATGGACGAGATTCTAGCTACGTCAGGTTTCTGTACCAAATGTTTGAACA 3474301 Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCT 18985 | | || |||||||||||||| || |||| Sbjct 3474302 TGAGGCACGCAAAATCACAATGGAGACCCT 3474331 >seq61 Length=3727055 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 65881 TTTCAAGATATTGTAGAGTTTTGTGAAAATATGGCAAATAAAGGAAAAATAGTGATAGTT 65940 |||| |||| |||| || |||||||| | ||| || || |||| | | || ||| Sbjct 2952722 TTTCCAGATGTTGTGGAATTTTGTGAGGAAATGTGCGATGCGGGTAAAAAAATAATCGTT 2952663 Query 65941 GCAGCATTGGATGGAACATTTAAAAGAAAACCTTTTGGTAATGTATTAAATTTAATTCCA 66000 |||||||| ||||| || || |||||||||||||||| |||| | | ||| | ||||| Sbjct 2952662 GCAGCATTAGATGGTACGTTCCAAAGAAAACCTTTTGGAAATGCACTTAATCTTATTCCT 2952603 Query 66001 TTATCTGAAACAGTAACAAAACTTACAGCTGTGTGTATGAAATGTTTTAAAGATGC 66056 | |||||| |||||||| |||| | | ||||||| ||||| |||||||| Sbjct 2952602 ATTGCTGAAAGCGTAACAAAGCTTAACTCAATTTGTATGAGCTGTTTCAAAGATGC 2952547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098949043280