Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_017968.1 Length=43786 Score E Sequences producing significant alignments: (Bits) Value seq89 242 1e-59 >seq89 Length=3091062 Score = 242 bits (268), Expect = 1e-59 Identities = 254/330 (77%), Gaps = 3/330 (1%) Strand=Plus/Plus Query 43058 TTTGAGTTTTTCGGTTCTAAAAATTGAATACTATCAGCAATAACTTCCGTAACATATACA 43117 ||||| ||||| ||||| | ||||||| |||||| || ||||| || ||| | ||| Sbjct 140307 TTTGA-TTTTTAGGTTCAAGGAATTGAACGCTATCACAAACTACTTCAGTTACAAAAACA 140365 Query 43118 CGTTGACCTTCCTTATTTTCATAATTCCGCGTTTGTAACCTACCATCTACGCCCG-TCAA 43176 || | ||||| | |||||||| | || | ||| | | ||| || ||||||| | || Sbjct 140366 CGACGTCCTTCTTGGTTTTCATAGCTACGTGATTGAATGCGACCGTCAACGCCCGCTAAA 140425 Query 43177 CGATCCTTTAGATAGGTATTTATTAACGTTCTCTGCTTGTTTTTTAAATACGATGATATT 43236 | | ||||| | | ||| ||||| || || |||||||||||| |||| |||| ||| Sbjct 140426 CTA-CCTTTGAACAAGTAGTTATTTACATTATCTGCTTGTTTTCTAAAAACGACACAATT 140484 Query 43237 AATAAAGTCTGCCTCGCGCTCTCCTTGTGCATTCGTAAATGTGCGGTTAACTGCTAATGT 43296 ||| || ||||| ||||| || ||||| ||||| ||||| || ||||| ||||||| || Sbjct 140485 AATGAAATCTGCTTCGCGTTCCCCTTGCGCATTTGTAAACGTACGGTTTACTGCTAGAGT 140544 Query 43297 GAATGATGCTACACTCACACCTGAAGGAGTGGTTCTGTATTCCGGATCTTTCGTTAAACG 43356 || | || |||||||| ||||| || || ||||| ||||| ||||||||||||||||| Sbjct 140545 AAAAGTCGCAACACTCACGCCTGAGGGTGTTGTTCTATATTCTGGATCTTTCGTTAAACG 140604 Query 43357 ACCTACTAATACAACTCTATTTAGCATTTA 43386 ||| ||||| ||||||||||||| |||||| Sbjct 140605 ACCGACTAAAACAACTCTATTTATCATTTA 140634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139991269281552