Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq89 228 5e-55 >seq89 Length=3091062 Score = 228 bits (252), Expect = 5e-55 Identities = 668/1002 (67%), Gaps = 44/1002 (4%) Strand=Plus/Plus Query 21476 TTATACTGCGCAAACTTCACATTCTTCTAC---CGATAATTTTCTAGTACGAGTGTAGTA 21532 ||||| || ||| | ||||||||| || | ||||||| | | | |||||| || Sbjct 2801898 TTATATTGAACAACTTGTACATTCTTCAACACTCAATAATTT---ATTTCTAGTGTAATA 2801954 Query 21533 -AAGGCTCTTCAGACCTT-TCTTGTACGCATATAAATAATACATAGCAAGCTCGTTTGTT 21590 || | | || | |||| | ||| ||||||| |||| ||| || || ||| Sbjct 2801955 TAAAGATTTTAATCCCTTATGATGT--GCATATACATAAAGTCTAGATAGTTCACGTGTA 2802012 Query 21591 GCGATATCACTATTTACATACAAAATAGTACTAATGCCTTGGTCAACGTGTGGTTGTATT 21650 | || ||| ||||||||| ||||| ||| ||| ||||| || ||||| | ||| || Sbjct 2802013 GAAATTTCAGAATTTACATATAAAATTGTAGAAATACCTTGATCCACGTGAGTTTGAATA 2802072 Query 21651 TCTGCGATTAAGTCAATCAGTTTGTACATGCTCA-TATCGTAAGCAGGTTTATACATTAA 21709 || |||||| || || | ||| | || || ||| | |||| ||||| || Sbjct 2802073 GTTGAGATTAAATCTATTAATTTC-ATTTGATCTGTATTAAATGCAGACTTATAG--TAC 2802129 Query 21710 GAAATTCTGTTTAG--ATAAGTATGGAGCAGGGAAGTACGTTTCTGCATTTTGGTATGTT 21767 | ||| | | | | ||||| |||| || || | |||||||| || || || Sbjct 2802130 CACATTGTCTCTGGTGATAAGAATGGCATTGGATAGAATGTTTCTGCGTTACCATAAGTA 2802189 Query 21768 CTCGGTTCGATTTTATGCGTAATTGGCATAACCGATTGAGTAGCGTTCTGCACATATCCA 21827 | |||| |||| | |||||||||||| || ||| || || || |||||| | Sbjct 2802190 CGGCGTTCAATTTGGTCAACAATTGGCATAACTGAACTAGTTGCATTTTGTACATATGAA 2802249 Query 21828 ATACTTTGTGTAGGTGCAATTGCTAATCTATATCCGTTGTACATTCC-TGTTAGCTTT-A 21885 |||||||||||||||||||||||||| | |||| | | | | | || ||| |||| | Sbjct 2802250 ATACTTTGTGTAGGTGCAATTGCTAAACGATATGCATGGAATAGGCCATGT--GCTTCCA 2802307 Query 21886 CTGTATTACTTAATGCTAACCATTCT---GCTTTACCCGGAATTTCGATTCCTTCAAACA 21942 || || ||| ||| ||| ||| ||| | |||| || | |||||||| | Sbjct 2802308 CTTCTTTTTGTAAAGCTTTCCAATCTTCAGCTGTT---GGAACATCAAAACCTTCAAATA 2802364 Query 21943 GCTTTTTAACTTTCTCTGTTTTAGGTG-AGAAGTCATTAACTAAATACTTATCGAAATAT 22001 || |||||| || ||| | | | |||| | | | ||| || || || Sbjct 2802365 ATTTACGAACTTTTTCATATTTCGCTTCAAAAGTT-TGAGTTGTATAGAATTCAAAGTAC 2802423 Query 22002 TTTCCGGAAGCATAATCCGATTTCTCGAATCCTTTAAATGTTTCACCT-TTTCTCAATGC 22060 || ||| || ||||| ||||| ||||| ||||| || ||| | ||||| | || Sbjct 2802424 TTACCGTTTGCGTAATCAGATTTTTCGAAGTCTTTATATACTTCTTGTCTTTCTTTA-GC 2802482 Query 22061 TATTTCTGCGCTTGC---TTCAATTGAGTAATAGTTCAACATCATGAAGAATGTACGAGC 22117 ||||| ||| |||||| || |||||||||| |||||| ||||| | || Sbjct 2802483 AATTTCCA---TTGAACGTTCAATGGAATAATAGTTCATCATCATAAAGAAAATGTTTGC 2802539 Query 22118 AAAGTCTTTCGCTTCTTCAGATTCATAAGCAATCAAGTTTTTAGATAAGTAGCCATGTAA 22177 || |||||||||||||||||||||||| |||| ||||||| |||||||||||||| Sbjct 2802540 GAAATCTTTCGCTTCTTCAGATTCATAACCAATTTTATTTTTAGCTAAGTAGCCATGTAG 2802599 Query 22178 GTTCATAGCTCCTAATCCTACTGAATGTAATTCTTCATTTGCTTTTTTAACACCTGGGGC 22237 ||||| | |||||||||||||||||||| || ||| |||||| |||| || || || Sbjct 2802600 ATTCATTACACCTAATCCTACTGAATGTAACTCCCTATTAGCTTTTCTAACGCCAGGTGC 2802659 Query 22238 GTTTTGGATCACCGACATATCTGATACCGCAGTTAATGCGTACATTGCATTATGGA-TAA 22296 || || || ||| ||| || | ||||| || | ||| || | || | | | Sbjct 2802660 ATTCTGAATATCCGCTTCATCACTAACAACCGTTAAAGCATCCATACCAGTGTGTACTGA 2802719 Query 22297 TCATACGTAGTCGCTTGTCTTCCATTACGTTTACGATGTTTAGTGAACCTAAGTTACAGC 22356 | | | | | || |||||| || || ||||| |||| ||||||||| ||||| Sbjct 2802720 GTCTTTGAATTTACCTG-ATTCCATCACATTAACGATATTTAATGAACCTAAATTACA-- 2802776 Query 22357 TAATATCGTTACGAATAATGTCTTCTTC---TCCATAATCCGTAATTGTTGATACTTCGG 22413 | | || || ||| |||| || ||||| |||||||| | || | || || Sbjct 2802777 TGAGAT-GTCACGTTTAATTTCATCTTCAGTGCCATAATCATTGATAATAGAAGTCTCTT 2802835 Query 22414 ATAGTTGGAAGATTTCTGTACAAAGATTAGACATTTTAACTT 22455 || |||||| ||||| ||||| | ||| |||||||| || Sbjct 2802836 GTAATTGGAAAATTTCAGTACATAAGTTACTCATTTTAATTT 2802877 Score = 113 bits (124), Expect = 3e-20 Identities = 186/266 (70%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422 |||||||| |||||||||||| ||||| | || || | || ||||| ||||| | Sbjct 2013485 ATATGATTTGAGTAAATATGAGCATCACCAAAAGTATGCACAAATTCTCCGACTTCTAAA 2013426 Query 78423 CCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATT 78482 || || | || || | || || | ||| || |||||||||||||| | Sbjct 2013425 CCACATTCTTTAGCTATTAAGTGCGTTAATAAACTATAACTTGCAATGTTAAATGGCACA 2013366 Query 78483 CCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGAT 78542 |||||||||| ||| | |||| || || ||||||||||| | |||||||| ||| Sbjct 2013365 CCTAAGAATATATCAGCACTTCTCTGATATAATTGGCAACTCAATTTTCCATC--TTGA- 2013309 Query 78543 ACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGA 78602 || ||||| ||||| | || || || || |||| ||||| ||| | |||| ||| Sbjct 2013308 ACATAAAATTGGAACATCGTATGGCATGGTGGTAAAGCCATTGTATCAATTTCAGTTGGA 2013249 Query 78603 TTCCAAGCAGACACAATATGTCTGCG 78628 ||||| ||||| | |||||||| || Sbjct 2013248 TTCCACGCAGAAATGATATGTCTACG 2013223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300154871203600