Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq157 134 2e-26 seq89 86.0 7e-12 >seq157 Length=245904 Score = 134 bits (148), Expect = 2e-26 Identities = 778/1229 (63%), Gaps = 60/1229 (5%) Strand=Plus/Minus Query 152044 TTGCCCGTGCATATATCGAATATCGTCATGATCGTGATATCGCCCGTGAACAAAACGGAA 152103 |||| ||| | || || || || ||||| ||||||||| ||||||| |||||| | | Sbjct 54065 TTGCGCGTACCTACATTGAGTACCGTCACGATCGTGATGTCGCCCGCGAACAACGCTGCC 54006 Query 152104 AATT-ATTCCGTGATATCAAGGGTTTGATGACTCTTAGTAACAAAGAATTAACCAACGAA 152162 || | || | | || || | | ||| | || |||| | | |||||| Sbjct 54005 GTTTGAATCAGGAAATTCGCGGTCTGGTTGAA-CAGAGCAACATGGCTCTGCTCAACGAG 53947 Query 152163 AACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCGGGTATCGTT 152222 ||||| |||||||| | || |||| || | ||||| || ||||| ||||||||| Sbjct 53946 AACGCCAACAAAGACAGTAAAGTGATCCCTACCCAGCGCGACCTGCTGGCCGGTATCGTT 53887 Query 152223 TCTAAACA-TATGGCGCGTAACCATATTCTACCGAAACATATTGTAGAGGCGCATGATTC 152281 | || || |||| | | ||| |||| || ||| | | || || ||||| Sbjct 53886 GCCAAGCACTATGCCAAGCAAC-ATATCCTGCCGCGCGACGTGGTGATTGCCCATGAACG 53828 Query 152282 CGGTGATATTCATTATCACGATCTGGATTACAGCCCGTTCACCCC-ATACACTAACTGCT 152340 |||||| ||||| || ||||||||||| ||| ||||||| ||| || | ||||| Sbjct 53827 CGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTC-AACTGTA 53769 Query 152341 GTCTTGTTGACCTAAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCG 152400 ||| | ||||| |||||||||| || |||||| ||||||||||| || || | Sbjct 53768 TGCTTATCGACCTTGAAGGCATGTTGACCAAAGGGTTCAAGATGGGTAACGCAGAGATTG 53709 Query 152401 AACCGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACAGATTG 152460 | ||||| ||||| ||| || || || | | ||| || |||| ||| ||| | | Sbjct 53708 AGCCGCCAAAATCCATCTCAACCGCGACGGCAGTGACGGCCCAAATCATCGCGCAGGTGG 53649 Query 152461 CTTCTCACCAGTACGGCGGGACAACCTTTGCAAATGTCGATCAGGTGCTGGCCCCTTACG 152520 | ||| |||||||| || ||| || | ||||| | | ||||| || | || Sbjct 53648 CAAGCCACATCTACGGCGGCACCACCATTAACCGTATCGATGAAATTCTGGCACCGTTCG 53589 Query 152521 TTGAAATGACGTACAACAAACACTTTAAA---GATGCTGTTTGGTACGGGGTTCCTAAAT 152577 | | | || || ||| || | || || ||| || |||| | Sbjct 53588 TCACCGCTAGCCATAAAAAGCACCGGGAAACCGCTGATGAGTGGCAC---ATTCCCGATG 53532 Query 152578 CAAAACAGTATGCGATGGAAAAAACAGAAAAGGATGTATTCGATGCGTTCCAGTCATACG 152637 | | |||||| || || | || | ||| || |||||||| | Sbjct 53531 CGGACGCCTATGCGCTGTCTCGTACCTA----GAGTGCTACGACGCCTTCCAGTCGCTGG 53476 Query 152638 AATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACAATCACTT 152697 ||||||||||||| || | || ||||| ||||| |||||||| || ||||| | || Sbjct 53475 AATATGAAGTAAATACGCTGCACACTGCCAATGGTCAGACGCCGTTCGTCACCTTTGGTT 53416 Query 152698 TCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCAGAAAGCGATTCTGAAAAACC 152754 ||| | || || ||||| ||| || |||||||| || | || ||| |||| Sbjct 53415 TCGACCTCGGCACCAGTTGG---GAATCGCGTCTGATCCAGCAATCCATCCTGCGCAACC 53359 Query 152755 GTATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATTCCCAAAACTGGTTATGTTTA 152814 ||||| || ||||| ||||| | | || | || ||||| |||||||| | || Sbjct 53358 GTATTGCCGGTCTGGGCAAAAACCGTAAAACTGCGGTGTTCCCCAAACTGGTGTTCGCTA 53299 Query 152815 TGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAACTATGATATTAAGAAATTGGCCC 152874 | | || | || | || | | || |||||||| || ||| || |||| | Sbjct 53298 TCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATGACATCAAGCAACTGGCAC 53239 Query 152875 TGGAATGTGCTTCA--AAGCGTATGTATCCGGATAT----TATTA-GCGCGGCTAATAAC 152927 |||| |||| || ||||| ||||| |||||||| |||| | | | | | | Sbjct 53238 TGGA--TTGCTCCAGCAAGCGGATGTACCCGGATATCCTCAATTACGATCAGGTTGTTAA 53181 Query 152928 CGTCGTATTACTGGCTCTAGCATTCCTGTATCTCCTATGGGTTGTCGTAGTTTCCTTAGC 152987 | |||| |||| | || | | || ||||| || | || |||||| || Sbjct 53180 GG-----TTACCGGCT----CGTT--TAAGACGCCCATGGGCTGCCACAGCTTCCTTGGC 53132 Query 152988 GTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGCGTTGTG 153047 |||| |||| || | || || | || | ||||| || || ||||| || || | Sbjct 53131 GTGT---ATGAGGAAGAGGGCAAGCAGATCCACGATGGTCGCAACAACCTCGGGGTAATC 53075 Query 153048 ACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACAGGAAGATGAAGACGCGCAT 153107 | ||||||| || || || ||| | ||||| ||| |||| | ||||| ||| Sbjct 53074 AGCCTCAACCTGCCGCGCATCGCGCTGGAAGCGGAA-CACA-----ACGAAGA-GCG--- 53025 Query 153108 GATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAAGCCCTGATGACT 153167 || ||| | || ||| | |||||| ||||| |||| ||||||| Sbjct 53024 -----TTTCTGGAACCTGCTGGATAATCGTCTGCAACTGGCGAAAAAAGCGTTGATGACG 52970 Query 153168 CGTATTGATAGTCTCAGAGGTGTTAAAGCCAGTGTAGCCCCGATCCTTTATACAGAAGGT 153227 || || | || | | || |||||| |||| || |||||||| |||| |||||| Sbjct 52969 CGCATCGCGCGTTTGGAAAACGTCAAAGCCCGTGTCGCTCCGATCCTGTATATGGAAGGT 52910 Query 153228 GCGTTTGGTGTACGGTTGAAACCCGATGA 153256 || | |||||||| ||||| | || || Sbjct 52909 GCCTGCGGTGTACGCCTGAAAGCAGACGA 52881 >seq89 Length=3091062 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 50860 GGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTTGAACAT 50919 || || ||||||||| ||||||| || ||| || || | | ||||| | || ||| Sbjct 1506518 GGCCATCATTTAAACATAAACGTCTTTAACCGAGACACATTGTTAGATGCAATGGATCAT 1506459 Query 50920 CCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGT 50966 |||||| |||||||||| |||| || ||||||||||| |||||||| Sbjct 1506458 CCTGAAGAATACCCACAACTAACTATACGTGTTTCTGGCTATGCAGT 1506412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557983821162160