Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_020199.1 Length=47252 Score E Sequences producing significant alignments: (Bits) Value seq89 111 5e-20 >seq89 Length=3091062 Score = 111 bits (122), Expect = 5e-20 Identities = 446/696 (64%), Gaps = 65/696 (9%) Strand=Plus/Minus Query 2193 TTAGTATATGATCACGTATCTGTAGGACTTGGTTCATTTCTAAATAGTTGTACATTTTAG 2252 ||| |||| |||||||| | || ||||| ||||||| | |||||| || ||||| Sbjct 2303699 TTAATATAAATTCACGTATTTTTAACACTTGAATCATTTCAAGATAGTTATATATTTTT- 2303641 Query 2253 ATTCATCTTTTTCGATATCCTCTATTGTTTTTCTTCTTTTAGGAATTTTGACATTAGTTA 2312 ||| |||||||| ||||| |||| ||||| | | ||| | | || |||| | ||| Sbjct 2303640 -TTCTTCTTTTTCAATATCTTCTAGAGTTTTAGCTTTCTTAAGTACTTCTACATCATTTA 2303582 Query 2313 ACAAATATTCATTTGGATAATTGTAAAATTTAACTGCATATTTAATAGCTCCTTTCATAT 2372 ||| || | ||| | || | |||||||| ||||||| | |||| |||||||| Sbjct 2303581 ACATATGCTTATTAGTGTATCTATAAAATTTCGTTGCATATGCTAAAGCTTTTTTCATAT 2303522 Query 2373 CTCCGAGTTGACGGGTTACTTGATTTTGAGAATAGATATCTGATAATTTATTAATAAATA 2432 | ||||| || | ||||| |||| ||||| || | |||||| |||| || | | Sbjct 2303521 CATTAAGTTGTCGTATAACTTGGTTTTCTGAATAAATTTTAGATAATGTATTGATTAGTT 2303462 Query 2433 TCTGCATATATTTTGTATCAAGTTTGTTTAAAAGCAAGTTCTCAGAGCAGTATCGTTTAA 2492 | || | || |||| ||| || || | ||| || ||| | | || | Sbjct 2303461 TTTGGACATGTTTTACATCTAGCTT---TGAAA-------CT------AGTGTAGATTCA 2303418 Query 2493 TGTTTTTAATTCTTATTTTTATATTATTAAGAGTAGTCAACTTTGAACCTGATGTTTTTA 2552 | | | |||| | | |||| |||| | | ||| Sbjct 2303417 TCTAT---------ATTTCTCT----TTAA---------------AACCAGGCCTATTTT 2303386 Query 2553 TATGATATTCAAGCCATTCATCTAATAGCGCGTGAAAAGTCAAAGTTTTTAATTCGCTTG 2612 |||||||| || ||||| ||||||| |||| || || | ||||| || Sbjct 2303385 TATGATATGTAAACCATTGGTCTAATAAATTATGAATCGTTAATTCCTCTAATTTA-TTA 2303327 Query 2613 ACGACTTGTTGTTCAGt----ttttcttttattttttCTTCTAAACGAAACATTGCTTCT 2668 | || | ||||| || | |||||| | || ||||| | || | | |||| Sbjct 2303326 TTG---TGATTATCAGTAATCTTATTTTTTATCCTATCATCTAATTGGAATAAAGATTCT 2303270 Query 2669 TTTTGAGATTGTTTTGTATTCTTGTTCAACACAACACTTACGC-GCTTCCATTTATCTGT 2727 || ||||| ||| |||| ||||||| ||||||| ||| | || || ||||||| || Sbjct 2303269 TTCTGAGAAATTTTAGTATCTTTGTTCATTACAACACATACTCTGCGTC-ATTTATCCGT 2303211 Query 2728 GTATGGATCTTTGTACTTCTCGTAATATCTGTATTTAGTTTCGTTAtttttgtttttaaa 2787 |||| ||||| ||||||| || | | ||||||||||| | ||| | |||||| Sbjct 2303210 GTATAAGTCTTTATACTTCTTATATAAGCGGTATTTAGTTTTGCCTGCTTTATCTTTAAA 2303151 Query 2788 tttttCAATCCACAT-GTTTATACCTCCTGA----GAGAACGTACGTTC--TGTAAATTT 2840 || ||| |||||| | ||| |||||| | |||||||| |||| | |||| | Sbjct 2303150 TTGTTCTGACCACATAATGTATTCCTCCTTACATTTAGAACGTAAGTTCAATATAAAGAT 2303091 Query 2841 GTAAAAAATAATAAGGGTAGGTGG-GCTACCCAAAA 2875 || ||||||| |||| || || || ||||||| Sbjct 2303090 -TAGAAAATAAATAGGGCAGTAGGAACTGCCCAAAA 2303056 Score = 93.3 bits (102), Expect = 1e-14 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1541 AAGCGTTTTATAAAGCTTATAAAAAATA--TAAGGGCaaaaaaaGGGCAGATTTAAGCTA 1598 ||| |||||||| | | | |||| || ||||| || ||||||||||||| | || Sbjct 2303995 AAGGGTTTTATAG-GTTGTTCAAAATTAACTAAGGTCAGAAAAAGGGCAGATAGAT--TA 2303939 Query 1599 ACTTGGAATGTTTTCGAGTTTTTGAGTTAGTTCTCTATCCATTTTTTCAGTTACATGAGT 1658 ||||||||| ||||| | ||| | |||| | | | |||| |||||| |||| ||| || Sbjct 2303938 ACTTGGAATATTTTCAAATTTCTAGGTTAACTGTTTGTCCA-TTTTTCTGTTAAATGCGT 2303880 Query 1659 ATATATGCGAATGGTTGTTTTTTCATCTACATGTCCTACCCTTTTCAT 1706 ||||| |||| || |||||||| || ||| || || |||||||| Sbjct 2303879 GTATATTTGAATAGTAGTTTTTTCGTCAGTATGACCAACTCTTTTCAT 2303832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151082284626936