Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq570 93.3 5e-14 seq127 87.8 2e-12 >seq570 Length=38645 Score = 93.3 bits (102), Expect = 5e-14 Identities = 210/312 (67%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 ||||||| ||||||||||||||||| ||||| | | || || ||| | ||||||| | Sbjct 29846 ACTTTGTTGAGATGTTTGTTGGTGTCGGTGCAAGCCGTGTACGTGATTTATTTGAAAATG 29905 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 | ||||| || ||||| | |||||||| || |||||||| || || |||| Sbjct 29906 CTAAGAAAAATGCGCCTTGTATCATTTTCATTGACGAAATTGATGCAGTTGGACGTCAAC 29965 Query 175514 GCAGCGCTGGTGGTATGC-CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | | |||||| || || | | || || | ||||||||| | |||||| || | Sbjct 29966 GTGGTGCTGGT-GTCGGCGGTGGCCACGATGAACGTGAACAAACATTGAATCAATTATTA 30024 Query 175573 ACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || |||||||| || ||| || || ||||| | | || || || ||||| Sbjct 30025 GTTGAAATGGATGGATTTGGTGAAAACGA---AGGCATCATTATGATAGCTGCTACTAAC 30081 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAA 175689 || || || | ||| || | | || ||||||||||||||| | | || ||| Sbjct 30082 CGTCCTGACATTTTAGATCCAGCATTATTACGTCCGGGTCGTTTTGATAGACAAATTCAA 30141 Query 175690 GTGGGTCTTCCA 175701 || |||| |||| Sbjct 30142 GTAGGTCGTCCA 30153 >seq127 Length=259506 Score = 87.8 bits (96), Expect = 2e-12 Identities = 251/379 (66%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| || || || || || || ||||| | ||||| ||||| Sbjct 118924 CCTGGAACTGGTAAGACCCTACTTGCTCGTGCGATTGCAGGTGAGGCTAATGTGCCATTT 118983 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| | | ||||| || |||||||||||||| ||||| | | || Sbjct 118984 TTTAGCATCTCTGGATCTGATTTTGTCGAAATGTTTGTTGGTGTTGGTGCAAGCCGTGTA 119043 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCA---ACCATGTATTGTCTTCATTGATGAG 175491 |||||| | || | ||| || | || || || ||||| | ||||| |||||| Sbjct 119044 CGCGATATGTTCG--ATC-AAGGCAAGAAACACGCTCCGTGTATAATTTTCATAGATGAG 119100 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGT-ATGCCAGCAAATGACGAGAGAGA 175550 || || || ||||| | ||| || || |||| | || || ||||| || ||||| Sbjct 119101 ATAGACGCAGTGGGTAGGCATCGTGGCATTGGTCTTGGTGGTGGC-AATGATGAAAGAGA 119159 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATGAGACTGGCAT 175607 |||||| | ||||| || | || |||||||| ||||| ||||| || || Sbjct 119160 ACAAACGTTAAATCAGTTATTAGTTGAAATGGATGGTTTTGAGTCTAATGAAGGTGTGAT 119219 Query 175608 TGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGG 175667 | | |||| || || ||||| ||| | | ||| || || ||| | || || Sbjct 119220 AATAG---TTGCTGCAACCAATCGTCCAGATGTTTTAGATCCAGCTCTGCTTAGACCTGG 119276 Query 175668 TCGTTTTGATCGCAAGATC 175686 ||||||||| || ||||| Sbjct 119277 TCGTTTTGACCGTCAGATC 119295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559145117760