Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq46 147 4e-30 >seq46 Length=4728336 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| || | ||| || | || | || | ||||| |||||| ||||| Sbjct 1480370 ATACCTCCTCTGAGCCTTAAAACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAATCT 1480429 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| || | |||||| || ||||| || |||||||| ||||| || Sbjct 1480430 GATAATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAATCTCTGCTGATCTGGA 1480489 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| |||||| || || | ||| || | ||| Sbjct 1480490 GGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGAAGGTTCG 1480549 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || || ||||| || ||||||||||| | ||| || |||||| Sbjct 1480550 ACTTCCAAGGTGATTGTTTTCCCTGTTAATGTTTTCACAAAGATTTGCATT 1480600 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || | || || | || | || | ||||| || || || || Sbjct 1463653 ATTCCACCTCTGAGCCTCAAGACAAGGTGAAGTGTCGATTCTTTCTGAATGTTGTAGTCG 1463712 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || | ||||||||| |||||||| | || || ||||| || Sbjct 1463713 GAAAGAGTTCGACCATCTTCAAGTTGTTTACCGGCAAAGATAAGCCTTTGCTGATCTGGA 1463772 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || ||| ||| ||||| || | || || | |||| Sbjct 1463773 GGAATACCTTCTTTATCCTGGATCTTAGCTTTCACATTTTCAATTGTGTCAGATGGTTCT 1463832 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||| |||||||||||||| ||||||| ||| || |||||| Sbjct 1463833 ACTTCCAAAGTAATTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCATT 1463883 Score = 127 bits (140), Expect = 4e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 192339 AGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 ||||| ||||| ||||| ||||| || | ||| || |||| |||| ||| || || Sbjct 1479946 AGTAGATTCTTTCTGAATATTGTAATCGGAGAGTGTACGACCATCTTCCAGTTGCTTGCC 1480005 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 |||||||| | || || ||||| || || ||||||||||||||||| ||||| ||| Sbjct 1480006 GGCAAAGATGAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTT 1480065 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 ||| || || | |||||| | || ||||| ||||| |||||||| ||||| || || Sbjct 1480066 TACGTTTTCAATGGTATCTGATGGCTCGACTTCGAGAGTGATGGTTTTGCCAGTCAAAGT 1480125 Query 192519 TTTAATAAATATCTGCAT 192536 || | || |||||||| Sbjct 1480126 CTTGACGAAGATCTGCAT 1480143 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| ||||| | | | || ||||| ||||| | || ||| || || |||||||| Sbjct 1481054 ATACCTCCTCTCAACCTGAGAACCAAATGCAAAGTCGATTCCTTTTGA-ATGTTATAATC 1481112 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| || | |||||| || ||||| || | ||||| || || || Sbjct 1481113 TGAGAGCGTACGCCCATCCTCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGG 1481172 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||| |||||||||||| ||| ||||| |||| ||||| | || Sbjct 1481173 GGGAATGCCTTCTTTGTCTTGTATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTC 1481232 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| ||||| || || |||| ||||||| ||| || ||||| Sbjct 1481233 GACTTCTAAAGTTATGGTCTTTCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || | || || | ||| | ||| | ||||| ||| ||||||||| Sbjct 1480598 ATTCCACCACGGAGCCTTAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTATAATCA 1480657 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || || || ||||| |||||||| | ||||| || || ||| Sbjct 1480658 GAAAGAGTGCGCCCATCTTCTAACTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGT 1480717 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || ||||| ||| ||||| || | ||| || | ||| Sbjct 1480718 GGGATACCTTCTTTATCCTGAATTTTCGCTTTGACATTTTCAATCGTATCCGATGGTTCG 1480777 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || || || ||||| ||||| | ||| || ||||| Sbjct 1480778 ACTTCAAGAGTGATCGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480827 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| || | || || | || | || | ||||| ||||| || || Sbjct 1480826 ATACCTCCTCTCAGCCTCAAAACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCC 1480885 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||| ||||| ||||| |||||||| ||||||||||| ||| Sbjct 1480886 GAAAGAGTGCGTCCATCTTCCAACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGT 1480945 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | || || | ||| Sbjct 1480946 GGGATGCCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCG 1481005 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| || || || || || | ||||| ||||| Sbjct 1481006 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTTACGAATATTTGCAT 1481055 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||| ||||| | ||||| |||| || | ||||| ||||| || || || ||| Sbjct 1481558 ATGTTATAGTCAGAAAGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTC 1481617 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || ||||||||||||||||| || || || ||||| |||| Sbjct 1481618 TGCTGATCTGGGGGGATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTG 1481677 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | |||||||| || ||||| || || || ||||| || || | || |||||| Sbjct 1481678 TCGGAAGGCTCTACTTCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGC 1481737 Query 192535 AT 192536 || Sbjct 1481738 AT 1481739 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || || | ||| || || ||||| || || ||||| ||||| || || || || |||||| Sbjct 1463500 TCTTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCCTCTTTA 1463559 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 ||||| || ||| ||| ||||| || | || || | ||||||||| | || || Sbjct 1463560 TCTTGAATCTTAGCTTTAACATTTTCAATTGTGTCAGATGGTTCTACTTCCAAGGTGATT 1463619 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||||||||||||| ||||||| ||| || |||||| Sbjct 1463620 GTTTTACCAGTTAAGGTTTTAACAAAAATTTGCATT 1463655 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 ||||| | ||| | |||| ||||| || |||||||| || | |||||| | || Sbjct 1481300 AATACAAGATGGAGGGTAGATTCTTTCTGAATGTTATAATCGGAAAGTGTTCGGCCGTCT 1481359 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 || | ||| || || ||||| || || ||||| ||||| || || || || ||||||||| Sbjct 1481360 TCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCCTCTTTATCT 1481419 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || ||| ||| ||||| || | ||| || | || ||||| | ||| ||||| Sbjct 1481420 TGAATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGCTCGACTTCCAAAGTGATGGTC 1481479 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || | || || | || |||||||| Sbjct 1481480 TTTCCTGTAAGAGTCTTCACGAAGATCTGCAT 1481511 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || | || || | ||| | || | ||||| || |||||||| Sbjct 1463881 ATTCCGCCTCTGAGCCTCAAGACAAGATGAAGTGTTGATTCTTTCTGAATGTTATAATCC 1463940 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||| ||||| || || |||||||| ||||||||||| ||| Sbjct 1463941 GAAAGAGTGCGTCCATCTTCCAACTGTTTTCCGGCGAAGATTAACCTCTGTTGATCTGGT 1464000 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || ||||||||||| || || || Sbjct 1464001 GGGATGCCTTCTTTATCCTGAATCTT 1464026 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || || ||||| | || || |||| || | || || || || ||| Sbjct 1570219 TCTTTTTGGATGTTGTAGTCAGAAAGCGTACGACCATCCTCGAGCTGCTTTCCGGCGAAG 1570160 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || |||||||| || || || || |||||||| || ||||| |||||| ||| ||||| Sbjct 1570159 ATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATTTTAGCTTTGACATTG 1570100 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | || || | || ||||| | ||| || || || ||||| | || || | Sbjct 1570099 TCAATGGTGTCCGATGGCTCAACTTCCAAAGTGATTGTCTTTCCAGTAAGAGTCTTCACG 1570040 Query 192526 AATATCTGCATTTT 192539 || ||||||||||| Sbjct 1570039 AAGATCTGCATTTT 1570026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984462315662700