Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq570 165 2e-35 seq6 95.1 4e-14 >seq570 Length=38645 Score = 165 bits (182), Expect = 2e-35 Identities = 339/496 (68%), Gaps = 10/496 (2%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||| | ||| ||||||||| ||||| || || | | ||| || || Sbjct 30131 CTATCAAAACGACCCGGACGTAATAATGCTGGATCTAAAATGTCAGGACGGTTAGTAGCA 30072 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || | | || || |||| ||| |||||||||||| ||| | |||||| Sbjct 30071 GCTATCATAATGATGCCTTCGTTTTCACCAAATCCATCCATTTCAACTAATAATTGATTC 30012 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||||||||| | |||||| | ||| | || |||| | | | | || Sbjct 30011 AATGTTTGTTCACGTTCATCGTGGCCACCGCC-GA--CACCAGCACCACG---TTGACGT 29958 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||||||||||||||| | ||| || | ||||| | ||| || || Sbjct 29957 CCAACTGCATCAATTTCGTCAATGAAAATGATACAAGGCGCATTTTTCTTAGCATTTTCA 29898 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || | ||||||| ||| || | ||||||| |||| || ||||| |||||| | Sbjct 29897 AATAAATCACGTACACGGCTTGCACCGACACCAACAAACATCTCAACAAAGTCAGAA-CC 29839 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | |||| | ||||| | | ||||| || || || || | || || | ||| || Sbjct 29838 ACTGATTGAGAAGAATGGTGTACCAGCTTCACCAGCAACCGCACGTGCAAGTAATGTTTT 29779 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG-CCCCAGCAGACT 289267 |||||| ||||| || || |||||||||| || || |||| | ||| |||| | | Sbjct 29778 ACCTGTACCAGGAGGACCTACTAATAGAACACCTTTAGGTATTCTTGAGCCCATTTG-TT 29720 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 || ||| | | | ||||| || || |||||||| | ||| | |||| |||||| Sbjct 29719 TAAATTGTTTATTGTCTTTTAAGAAATCGACAATTTCAATTAATTCTTGTTTTTCCTCAT 29660 Query 289328 CACATCCTGCTACATC 289343 | || |||||||| Sbjct 29659 CTGCACCAGCTACATC 29644 >seq6 Length=15957911 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| | ||||||||||| |||||||| ||||| | | || ||||||||||| Sbjct 12726420 ACCAGTTTCTGCAGTTTTTACAGCAGTATCAATAAGACCTTCTCTTCCTCCCATAGCATG 12726361 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || ||| ||| | | ||| | || || || || | || Sbjct 12726360 GAAAAAGAACTCAGATGGTGTTAACCCGGCAAGATATGAGTTTTCCACAAATCCTCTCGA 12726301 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| || || ||| || | ||||| |||||||| || ||| | |||| | || Sbjct 12726300 CTCAGGACCATAATCGTCTTTAATGAAGTGAGGCAGGGTTCTCTTCCTAAAGCCAAACGG 12726241 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||||||| || || |||||||| || || Sbjct 12726240 AATACGCTTACCTTCTACGTTCTGTTGCCC 12726211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471791161556474