Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_022758.1 Length=44459 Score E Sequences producing significant alignments: (Bits) Value seq89 107 5e-19 >seq89 Length=3091062 Score = 107 bits (118), Expect = 5e-19 Identities = 438/680 (64%), Gaps = 64/680 (9%) Strand=Plus/Minus Query 24832 TTAGTATATGATCACGTATCTGTAGGACTTGGTTCATTTCTAAATAGTTGTACATTTTAG 24891 ||| |||| |||||||| | || ||||| ||||||| | |||||| || ||||| Sbjct 2303699 TTAATATAAATTCACGTATTTTTAACACTTGAATCATTTCAAGATAGTTATATATTTTT- 2303641 Query 24892 ATTCATCTTTTTCGATATCCTCTATTGTTTTTCTTCTTTTAGGAATTTTGACATTAGTTA 24951 ||| |||||||| ||||| |||| ||||| | | ||| | | || |||| | ||| Sbjct 2303640 -TTCTTCTTTTTCAATATCTTCTAGAGTTTTAGCTTTCTTAAGTACTTCTACATCATTTA 2303582 Query 24952 ACAAATATTCATTTGGATAATTGTAAAATTTAACTGCATATTTAATAGCTCCTTTCATAT 25011 ||| || | ||| | || | |||||||| ||||||| | |||| |||||||| Sbjct 2303581 ACATATGCTTATTAGTGTATCTATAAAATTTCGTTGCATATGCTAAAGCTTTTTTCATAT 2303522 Query 25012 CTCCGAGTTGACGGGCTACTTGATTTTGAGAATAGATATCTGATAATTTATTAATAAATA 25071 | ||||| || ||||| |||| ||||| || | |||||| |||| || | | Sbjct 2303521 CATTAAGTTGTCGTATAACTTGGTTTTCTGAATAAATTTTAGATAATGTATTGATTAGTT 2303462 Query 25072 TCTGCATATATTTTGTATCTAGTTTGTTTAAAAGCAAGTTCTCAGAGCTGTATCGTTTAA 25131 | || | || |||| |||||| || | ||| || || |||| | || | Sbjct 2303461 TTTGGACATGTTTTACATCTAGCTT---TGAAA-------CT---AG-TGTA--GATTCA 2303418 Query 25132 TGTTTCTAATTCTTATTTTTATATTATTAAGAGTAGTCAACTTTGAACCTGATGTTTTTA 25191 | ||| ||||| | | |||| |||| | | ||| Sbjct 2303417 T----CTA-----TATTTCTCT----TTAA---------------AACCAGGCCTATTTT 2303386 Query 25192 TATGATATTCAAGCCATTCATCTAATAGCGCGTGAAAAGTCAAAGTTTTTAATTCGCTTG 25251 |||||||| || ||||| ||||||| |||| || || | ||||| || Sbjct 2303385 TATGATATGTAAACCATTGGTCTAATAAATTATGAATCGTTAATTCCTCTAATTTA-TTA 2303327 Query 25252 ACGACTTGTTGTTCAGt----ttttcttttattttttCTTCTAAACGAAACATTGCTTCT 25307 | || | ||||| || | |||||| | || ||||| | || | | |||| Sbjct 2303326 TTG---TGATTATCAGTAATCTTATTTTTTATCCTATCATCTAATTGGAATAAAGATTCT 2303270 Query 25308 TTTTGAGATTGTTTTGTATTCTTGTTCAACACAACACTTACGC-GCTTCCATTTATCTGT 25366 || ||||| ||| |||| ||||||| ||||||| ||| | || || ||||||| || Sbjct 2303269 TTCTGAGAAATTTTAGTATCTTTGTTCATTACAACACATACTCTGCGTC-ATTTATCCGT 2303211 Query 25367 GTATGGATCTTTGTACTTCTCGTAATATCTGTATTTAGTTTCGTTAtttttgtttttaaa 25426 |||| ||||| ||||||| || | | ||||||||||| | ||| | |||||| Sbjct 2303210 GTATAAGTCTTTATACTTCTTATATAAGCGGTATTTAGTTTTGCCTGCTTTATCTTTAAA 2303151 Query 25427 tttttCAATCCACAT-GTTTATACCTCCT----GTAGGAACGTACGTTC--TGTAAATTT 25479 || ||| |||||| | ||| |||||| | ||||||| |||| | |||| | Sbjct 2303150 TTGTTCTGACCACATAATGTATTCCTCCTTACATTTAGAACGTAAGTTCAATATAAAGAT 2303091 Query 25480 GTAAAAAATAATAAGGGTAG 25499 || ||||||| |||| || Sbjct 2303090 -TAGAAAATAAATAGGGCAG 2303072 Score = 96.9 bits (106), Expect = 1e-15 Identities = 157/221 (71%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 24129 CACATTATGATGATATGTTTAATTCAAGAAAAGCTTTAACGCCAGTGTTCTCAAGCGTTT 24188 || || |||||| || || ||| ||||||| || | || | || ||| |||| Sbjct 2304045 CAGATGATGATGTGATTTTGTATT--AGAAAAGGCTTGATTTCAATATTTAAAAGGGTTT 2303988 Query 24189 TATAAAGCTTGTAAAAAATA---TAAGGGCaaaaaaaGGGCAGATTTAAGCTAACTTGGA 24245 |||| | |||| ||||| ||||| || ||||||||||||| | ||||||||| Sbjct 2303987 TATA--GGTTGTTCAAAATTAACTAAGGTCAGAAAAAGGGCAGATAGAT--TAACTTGGA 2303932 Query 24246 ATGTTTTCGAGTTTTTGAGTTAGTTCTCTATCCATTTTTTCAGTTACATGAGTATATATG 24305 || ||||| | ||| | |||| | | | |||| |||||| |||| ||| || ||||| Sbjct 2303931 ATATTTTCAAATTTCTAGGTTAACTGTTTGTCCA-TTTTTCTGTTAAATGCGTGTATATT 2303873 Query 24306 CGAATGGTTGTTTTTTCATCTACATGTCCTACCCTTTTCAT 24346 |||| || |||||||| || ||| || || |||||||| Sbjct 2303872 TGAATAGTAGTTTTTTCGTCAGTATGACCAACTCTTTTCAT 2303832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142144833426804