Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq46 104 2e-17 >seq46 Length=4728336 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || |||||||| ||||| || ||||| | ||| ||| || | Sbjct 1481739 ATGCAGATCTTCGTAAAGACTTTAACCGGCAAGACTATTACACTTGAAGTAGAGCCTTCC 1481680 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| ||||||||||| | ||| |||||| Sbjct 1481679 GACACTATTGAAAATGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCCCCAGATCAG 1481620 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| || || |||||||| || || | ||| | | ||||| ||| Sbjct 1481619 CAGAGGTTGATTTTCGCTGGAAAACAGCTTGAAGATGGTCGAACCCTTTCTGACTATAAC 1481560 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || || || | ||| | |||||||||||| |||| || Sbjct 1481559 ATTCAAAAAGAATCAACCCTCCACCTTGTGTTGAGATTGAGAGGAGG 1481513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||| |||| || || ||||| || | ||| ||| | Sbjct 1481283 ATGCAAATTTTTGTTAAAACTCTAACCGGAAAGACCATAACTTTAGAAGTCGAGCCATCA 1481224 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || ||| || || || ||||||||| | ||| || ||| Sbjct 1481223 GACACTATTGAAAATGTCAAAGCTAAAATACAAGACAAAGAAGGCATTCCCCCAGACCAG 1481164 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || ||||| || ||||| | || | | || || ||| Sbjct 1481163 CAGAGGCTGATTTTTGCCGGAAAACAACTCGAGGATGGGCGTACGCTCTCAGATTATAAC 1481104 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| || || ||||| |||| | || ||| |||| || Sbjct 1481103 ATTCAAAAGGAATCGACTTTGCATTTGGTTCTCAGGTTGAGAGGAGG 1481057 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || ||| | ||||| || ||||| || | ||| ||| || Sbjct 1481511 ATGCAGATCTTCGTGAAGACTCTTACAGGAAAGACCATCACTTTGGAAGTCGAGCCTTCT 1481452 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| |||||| |||||||| || | || |||||| Sbjct 1481451 GATACAATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGTATTCCTCCAGATCAG 1481392 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| || || || || || |||| | |||| | | || || ||| Sbjct 1481391 CAGAGGTTGATTTTTGCAGGAAAGCAACTTGAAGACGGCCGAACACTTTCCGATTATAAC 1481332 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || || ||||| | || | || |||||||||||||| || Sbjct 1481331 ATTCAGAAAGAATCTACCCTCCATCTTGTATTGAGATTGCGAGGAGG 1481285 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/235 (68%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || ||||||||||| || ||||| ||| | Sbjct 1480143 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACTCTCGAAGTCGAGCCATCA 1480084 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | |||||| || || ||||||||||| | ||| |||||| Sbjct 1480083 GATACCATTGAAAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGATCAG 1480024 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | ||| || || || ||||| || | ||| | | || ||||| Sbjct 1480023 CAAAGGCTCATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACACTCTCCGATTACAAT 1479964 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG-GGGAAATAAT 107789 ||||| || || ||||| | ||| | || ||||| | ||||| || |||||| Sbjct 1479963 ATTCAGAAAGAATCTACTCTCCACCTCGTACTGAGACTCCGAGGAGGCCAATAAT 1479909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869984441978