Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_023499.1 Length=42906 Score E Sequences producing significant alignments: (Bits) Value seq89 176 1e-39 >seq89 Length=3091062 Score = 176 bits (194), Expect = 1e-39 Identities = 237/329 (72%), Gaps = 1/329 (0%) Strand=Plus/Minus Query 11980 TAAATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACC 12039 |||||| |||| ||| | ||||| ||||||||||| | ||| ||||||| ||||| Sbjct 140634 TAAATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACA 140575 Query 12040 ACTCAAAGTGGTGTAAATGTAGCATCATTCACATTAGCAGTTAACCGCACATTTACGAAT 12099 || | || || | ||| || | || || ||||||| ||||| || ||||| ||| Sbjct 140574 ACACCCTCAGGCGTGAGTGTTGCGACTTTTACTCTAGCAGTAAACCGTACGTTTACAAAT 140515 Query 12100 GCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTATTTAAAAAACAAGCAGAG 12159 || ||||| || ||||| ||||| || |||||| |||| |||| |||||||||||| Sbjct 140514 GCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTTTTAGAAAACAAGCAGAT 140455 Query 12160 AACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACG 12219 || || ||||| ||| | | ||||| || |||||||| || ||| | | ||| | Sbjct 140454 AATGTAAATAACTACTTGTTCAAAGGTAGTTTAGCGGGCGTTGACGGTCGCATTCAATCA 140395 Query 12220 CGGAACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGT 12279 || | ||||||||| | ||||| | ||||| | || || ||||| ||| ||||| Sbjct 140394 CGTAGCTATGAAAACCAAGAAGGACGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGC 140335 Query 12280 ATTCAATTTTTAGAACCGAAGAACTCAAA 12308 ||||||| | ||||| || || ||||| Sbjct 140334 GTTCAATTCCTTGAACCTAA-AAATCAAA 140307 Score = 96.9 bits (106), Expect = 1e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1214 ATTTATAATTTCAGAAACTCTATCATTGTATTCTCTTTGTGACAGACCATGATAGTCTTT 1273 ||| |||||||| || || | ||||||||| ||| ||| || | || | | | ||||| Sbjct 2667756 ATTCATAATTTCTGATACGCGATCATTGTACTCTTCTTGGGATAATCCTTCAAAATCTTT 2667697 Query 1274 TTGCATTGAAAGCTCTTCAATTTGTTTTTGAGCCTGCTCAGACATACCCTCTGTAGAAAA 1333 ||| ||| | || | |||| |||| ||| | |||||||| || || |||||||| Sbjct 2667696 TTGTCTTGTTAATTCATTTATTTTCTTTTTAGCTTCTTCAGACATGCCTTCAGTAGAAAA 2667637 Query 1334 ATCAGTGGGAGGCATATTATTTAAATCAACTTTTTGCTTTT 1374 |||| | ||||||||||| ||||||| ||||| |||| Sbjct 2667636 ATCACCAGCTGGCATATTATTCAAATCAATGTTTTGATTTT 2667596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137175316164432