Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_023500.1 Length=43301 Score E Sequences producing significant alignments: (Bits) Value seq89 836 0.0 >seq89 Length=3091062 Score = 836 bits (926), Expect = 0.0 Identities = 761/955 (80%), Gaps = 42/955 (4%) Strand=Plus/Minus Query 9 AATGGCTAAGAAGAAATCACCAGGTACATTAGCGGAAAATCGTAAAGCTAGACATGATTA 68 |||| | ||||| ||||||||||| ||| |||| |||||||||||||| ||||||||||| Sbjct 2739482 AATGCCAAAGAAAAAATCACCAGGAACACTAGCAGAAAATCGTAAAGCAAGACATGATTA 2739423 Query 69 TAATATTGAAGACACGATTGAAGCGGGAATTGTATTGCAAGGCACAGAAATAAAATCAAT 128 |||||||||||| |||||||||||||| ||||| || ||||| |||||||| ||||| || Sbjct 2739422 TAATATTGAAGATACGATTGAAGCGGGCATTGTGTTACAAGGAACAGAAATTAAATCGAT 2739363 Query 129 TCGCCGAGGTAGTGCTAACCTTAAAGATAGTTATGCGCAAGTTAAAAACGGTGAAATGTA 188 || ||||| ||||| || ||||||||||||||||| |||||||| ||||||||||| Sbjct 2739362 CCGTCGAGGAAGTGCAAATCTTAAAGATAGTTATGCACAAGTTAACCGTGGTGAAATGTA 2739303 Query 189 TTTGAATAATATGCATATAGCACCATACGAAGAAGGGAATCGTTTTAATCACGATCCTCT 248 ||| |||||||||||||| ||||| || |||||||| || || ||||| || || || | Sbjct 2739302 TTTAAATAATATGCATATTGCACCTTATGAAGAAGGTAACCGATTTAACCATGACCCACG 2739243 Query 249 TCGTTCTCGAAAATTATTATTGCATAAACGTGAAATCATTAAATTAGGTGATCAAACACG 308 |||||| || || |||||||||| ||||||||||| || ||| ||||||| | ||||| Sbjct 2739242 TCGTTCACGTAAGCTATTATTGCACAAACGTGAAATTATAAAACTAGGTGAACGTACACG 2739183 Query 309 TGAAATTGGTTATTCGATTGTGCCGTTAAAGCTTTATTTGAAGCATGGACATTGTAAAGT 368 |||| |||||||||| ||||| || || ||||| ||| | || || || || || ||||| Sbjct 2739182 TGAAGTTGGTTATTCAATTGTTCCATTGAAGCTCTATCTCAAACACGGTCACTGCAAAGT 2739123 Query 369 ATTGCTTGGTGTCGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTAAAAGAAAA 428 || | ||||| || ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 2739122 CTTATTAGGTGTTGCTCGAGGTAAGAAGAAATATGATAAACGCCAAGCTTTAAAAGAAAA 2739063 Query 429 AGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTGGTTGCT 488 |||||| |||| ||||| || | || |||||||||||||||| |||| | |||| Sbjct 2739062 AGCAGTACAACGTGATGTAGCTAGAGAGATGAAAGCCCGTTATTGAGCGGATATATTGCC 2739003 Query 489 TAATCGGGCTATATTTGATATAGTTATATGTGCTTT-TGTAAA----------TTGC--A 535 || | || |||| || | ||||||||||| || ||| || | Sbjct 2739002 AAAGATGATAATCTTTGGTAATATAATATGTGCTTTCTGAAAAAGCTTAGTAGTTACTGT 2738943 Query 536 AAAGT-ATGAT-------TT-----GT----------TTGATT---TATTATTTCGGGGA 569 | ||| || || || || | ||| ||||||| |||| Sbjct 2738942 ATAGTCATTATAAAGTCATTACGAAGTCAGCAGAAAGTACATTTAATATTATTCTGGGGG 2738883 Query 570 CGTTTCTGGATTCGACAGGGGTCCCCCGAGCTCATTAAGCGTGTCGGAGGGTTGTCTTCG 629 ||||| |||||||||||||||| || ||||| ||||||||||||||||| ||||| || Sbjct 2738882 CGTTTTTGGATTCGACAGGGGTTCCATGAGCTAGTTAAGCGTGTCGGAGGGCTGTCTCCG 2738823 Query 630 TCATCAACACACACAGTTTATAATAACTGGCAAAACAAACAATAATTTCGCAGTAGCTGC 689 |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 2738822 TCATCAACACACACAG-TTATAATAACTGGCAAAGAAAACAATAATTTCGCAGTAGCTGC 2738764 Query 690 CTAATCGCACTCTGCATCGCCTAACAGCATTTCCTATGTGCTGTTAACGCGATTCAACCT 749 |||| ||||||||||||||||||| | || |||||||| | |||||||||||||||||| Sbjct 2738763 GTAATAGCACTCTGCATCGCCTAACGGTATCTCCTATGTACCGTTAACGCGATTCAACCT 2738704 Query 750 -TAATAGGATATGCTAGACACTGCCGTTTGAAGTCTGTTTAGAAGAAACTTAATCAAGCT 808 || ||||||| ||||| ||||||||||||||||||| ||||||| | |||||||| || Sbjct 2738703 ATAGTAGGATACGCTAGGCACTGCCGTTTGAAGTCTGCCTAGAAGAGA-TTAATCAAACT 2738645 Query 809 AGCATCATGTTGGTTGTTTATCACTTTTCATGATGCGAAACTTTTCGATAAACTACACAC 868 ||||| ||| || ||| |||||| | ||| ||||||||| | | |||| ||||| ||| Sbjct 2738644 AGCATAATGACGGATGTCTATCACCTCCCATTATGCGAAACCTATTGATAGACTACGCAC 2738585 Query 869 GTAGAAAGATGTGTATCAGGACCTCTGGACGCGGGTTCAAATCCCGCCGTCTCCA 923 |||||| ||||||| |||||||||||||||||| |||||||||||||||| Sbjct 2738584 GTAGAAGTGCTAGTATCAGAACCTCTGGACGCGGGTTCGAATCCCGCCGTCTCCA 2738530 Score = 91.5 bits (100), Expect = 4e-14 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 2545 CCACATGCGCCTAACACCAACGTACTTGCTAATAGTAAACCTAATAATCTTTTCATGTTC 2604 |||||||| |||||||| || |||||||| |||| ||||||||| | ||||||| || Sbjct 2302432 CCACATGCTCCTAACACTAATGTACTTGCCAATAATAAACCTAAAACCTTTTTCATTTTA 2302373 Query 2605 ATTTCTCCTTTGTTTATATTTCCTTATATTTAAAAACTCTCAACGGCTCAAA 2656 | ||||||| ||| |||| ||||||||||| || | || |||||||| Sbjct 2302372 CATACTCCTTTATTTTAATTTT-TTATATTTAAACACACGTAATGGCTCAAA 2302322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138439295120412