Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq157 152 8e-32 seq89 120 5e-22 >seq157 Length=245904 Score = 152 bits (168), Expect = 8e-32 Identities = 241/343 (70%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 188168 TGGAAAGAACTGACGGGCTACGGTTTCAGTCTGTACAGTACACCAAGTGAATCGCTGTGT 188227 ||||||||| || |||||||||||||| || |||||||| || |||||| |||||| Sbjct 52707 TGGAAAGAAGAAACCGGCTACGGTTTCAGCCTTTACAGTACGCCGAGTGAAAACCTGTGT 52648 Query 188228 GATCGTTTCTGTCGTCTCGACCAAGAGAAATACGGTGTCATTACAGGTATCAATGACAAA 188287 || |||||||| ||| ||||| | ||| ||| || | |||| | | || ||| Sbjct 52647 GACCGTTTCTGCCGTATCGACACCGCTGAATTCGGCGTGGTACCAGGCGTGACCGATAAA 52588 Query 188288 GACTATTACACAAACTCGTTTCACTTAGACGTGTTCAAGAAAGTTAACCCATTTGAGAAA 188347 | || ||||| ||| |||||| | |||||| ||||| || || || | ||||| Sbjct 52587 GGTTACTACACCAACAGCTTTCACCTGGACGTGGAGAAGAAGGTGAATCCTTACCAGAAA 52528 Query 188348 ATTGATTTTGAAGCTG-CATACCCAATTCATGCAAACGGTGGTTTCATCTGTTATGCTGA 188406 || || |||||| ||| | |||||| | |||||||| || ||||| || || | || Sbjct 52527 ATCGACTTTGAA-CTGCCCTACCCACCGCTGGCAAACGGAGGCTTCATTTGCTACGGCGA 52469 Query 188407 GTTCCCGAATATGCGAGATAACATCAAAGGTCTAGAGCGCGTATGGGATTATGCTTACAC 188466 || ||||| ||| | ||||| |||||| || || ||| |||||||| || | Sbjct 52468 GTATCCGAACCTGCAACATAACCTCAAAGCGCTGGAAGACGTCTGGGATTACAGCTATAG 52409 Query 188467 TAAAGTAGCTTACTTCGGTACGAATACCCCGATTGATCAGTGT 188509 || | || | ||| || ||||| ||||| ||| ||||| Sbjct 52408 CCGTGTGCCCTATTACGGCACCAATACGCCGATCGATGAGTGT 52366 >seq89 Length=3091062 Score = 120 bits (132), Expect = 5e-22 Identities = 220/320 (69%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 188192 TTCAGTCTGTACAGTACACCAAGTGAATCGCTGTGTGATCGTTTCTGTCGTCTCGACCAA 188251 ||||| | || || |||||||||||||| || |||||||| ||| | || || Sbjct 557312 TTCAGCGTTTATAGCACACCAAGTGAATCTCTAACCGATCGTTTTTGTAGACTTGATATG 557371 Query 188252 GAGAAATACGGTGTCATTACAGGTATCAATGACAAAGACTATTACACAAACTCGTTTCAC 188311 || ||||| |||| || | ||| |||||||| ||||| ||| || || ||| Sbjct 557372 GAAAAATATGGTGAAATACCGAACGTCACTGACAAAGGATATTATCAAAATTCATTCCAC 557431 Query 188312 TTAGACGTGTTCAAGAAAGTTAACCCATTTGAGAAAATTGATTTTGAAGCTGCATACCCA 188371 | || ||| || | ||| |||||||||||||||||||||||| | || || Sbjct 557432 TATGATGTGAGAAAAGATATTACACCATTTGAGAAAATTGATTTTGAAAAGGATTATCCT 557491 Query 188372 ATTCATGCAAACGGTGGTTTCATCTGTTATGCTGAGTTCCCGAATATGCGAGATAACATC 188431 || |||||| ||||||| |||| ||| ||| | ||||| | |||| | Sbjct 557492 TTTTATGCAAGTGGTGGTTACATCCATTACTGTGAATATCCGAAATTAAATCATAATTTA 557551 Query 188432 AAAGGTCTAG-AGCGCGTATGGGATTATGCTTACACTAAAGTAGCTTACTTCGGTACGAA 188490 |||| ||| |||| |||||||||||| | || ||| ||| ||| || || ||||| Sbjct 557552 AAAGCCTTAGAAGCG-GTATGGGATTATTCATATGATAAGGTAAGTTATTTAGGCACGAA 557610 Query 188491 TACCCCGATTGATCAGTGTA 188510 | ||||||||||| |||| Sbjct 557611 CATTCCGATTGATCATTGTA 557630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790142952502080