Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_024355.1 Length=93794 Score E Sequences producing significant alignments: (Bits) Value seq89 217 9e-52 >seq89 Length=3091062 Score = 217 bits (240), Expect = 9e-52 Identities = 909/1396 (65%), Gaps = 83/1396 (6%) Strand=Plus/Plus Query 74550 TTACACTGCACAACTTAAACATTCTGCTTG--TTGATAATCTTTTTGTCTAGTATAATAT 74607 ||| | || ||||||| ||||||| | | ||||| | ||| ||||| |||||| Sbjct 2801898 TTATATTGAACAACTTGTACATTCTTCAACACTCAATAATTTATTT--CTAGTGTAATAT 2801955 Query 74608 AATG-TTTTAATACCTTTGTGATGAGCATATAGATAAATTCTAGTCAATT---GTCTAGT 74663 || | ||||||| |||| ||||| ||||||| ||||| ||||| | || || ||| Sbjct 2801956 AAAGATTTTAATCCCTTA-TGATGTGCATATACATAAAGTCTAGATAGTTCACGTGTAGA 2802014 Query 74664 ATCTACACTATCCTTAACAAACAACGTAAAACTAATACCTTGATGAACGTGTTTTTGAAT 74723 | | || || | ||| | || | | ||||||||||| ||||| ||||||| Sbjct 2802015 AATTTCAGAAT---TTACATATAAAATTGTAGAAATACCTTGATCCACGTGAGTTTGAAT 2802071 Query 74724 AGTAGCAATTAAATCCACTACTTTAAACATATCCATATCGTATGCTTCTTTGTAATAGAA 74783 ||| | |||||||| | || ||| | ||| ||| |||| || |||| | Sbjct 2802072 AGTTGAGATTAAATCTATTAATTTCATTTGATCTGTATTAAATGCAGACTT---ATAGTA 2802128 Query 74784 CCATGTAGAAT-TATTTAAACCA--GGCATAGGATAGAATGTT-CTACTATCTCCATAAG 74839 ||| | | | | | | | | ||||| |||||||||||| || | | ||||||| Sbjct 2802129 CCACATTGTCTCTGGTGATAAGAATGGCATTGGATAGAATGTTTCTGCGTTA-CCATAAG 2802187 Query 74840 TTCTTTCTTCTACTCTATCAGTGATTGGCATTACTGATGCTGTGGCTGATTGAACATACG 74899 | | ||| | | ||| |||||||| ||||| || || ||| ||||| | Sbjct 2802188 TACGGCGTTCAATTTGGTCAACAATTGGCATAACTGAACTAGTTGCATTTTGTACATATG 2802247 Query 74900 AGATGCTGCCGGTAGGTGCAATTGCTGATAAATATGAATGATACATACCATCTTCTTTTA 74959 | || || ||||||||||||||| | ||||| ||| | | |||| | ||| | Sbjct 2802248 AAATACTTTGTGTAGGTGCAATTGCTAAACGATATGCATGGAATAGGCCATGTGCTTCCA 2802307 Query 74960 CTTTTTGAGATAATGCTTTCCAATCATCTTTTGTAGGAATATGAATACCTTCAAATAATG 75019 ||| || ||| ||||||||||| || ||| |||| || || ||||||||||||| Sbjct 2802308 CTTCTTTTTGTAAAGCTTTCCAATCTTCAGCTGTTGGAACATCAAAACCTTCAAATAAT- 2802366 Query 75020 CTTTC--ACTTTGTCAGATTTAATCTCAAAATCTTCA---TTATAACGCTCAAAATATTT 75074 || | ||||| ||| |||| |||||| || | |||| ||||| || || Sbjct 2802367 -TTACGAACTTTTTCATATTTCGCTTCAAAAGTTTGAGTTGTATAGAATTCAAAGTACTT 2802425 Query 75075 ACCAGTTTG-ATAGTCTGAACCTTCAAAGCCTTTAAAAGTTTTATTTCTTTCTTTAGCAA 75133 ||| ||||| || || || ||| ||| ||||| | || | |||||||||||||| Sbjct 2802426 ACC-GTTTGCGTAATCAGATTTTTCGAAGTCTTTATATACTTCTTGTCTTTCTTTAGCAA 2802484 Query 75134 TGTCAGTTGA---TTCCATAATAGTCCAATAGTTTACAGTTCTAAAGAATGCGTCTACAA 75190 | || |||| ||| ||| | ||||||| | | ||||||| || | | | Sbjct 2802485 TTTCCATTGAACGTTC---AATGGAATAATAGTTCATCATCATAAAGAAAATGTTTGCGA 2802541 Query 75191 ACTCAATAGCGTCTTTTGATTCATAAGCAATACCGTTTTGTGCTAAATATCCATGTAGAC 75250 | || | || |||| ||||||||| |||| |||| ||||| || ||||||||| Sbjct 2802542 AATCTTTCGCTTCTTCAGATTCATAACCAATTTTATTTTTAGCTAAGTAGCCATGTAGAT 2802601 Query 75251 CTAAAGCCCCCAACCCAACAGAGTGCATTTCATCATTGGCTTTTTTAACTGCTGGTGCAT 75310 | | || || || || || || | || ||| |||||| |||| | ||||||| Sbjct 2802602 TCATTACACCTAATCCTACTGAATGTAACTCCCTATTAGCTTTTCTAACGCCAGGTGCAT 2802661 Query 75311 TTTTAATGTTTGTTTCATCAGACACTCTTGTTAATGCTTTGAT-TGAGTATCTTACTG-T 75368 | | ||| | | ||||||| || ||||| || | || ||| | ||||| Sbjct 2802662 TCTGAATATCCGCTTCATCACTAACAACCGTTAAAGCATCCATACCAGTGT-GTACTGAG 2802720 Query 75369 TGTTTCAAAGTCTTTTTG-TTTCATGACATTTCCAATATTTAATGAACCTAAATTACATG 75427 | ||| || | | || || ||| ||||| | ||||||||||||||||||||||||| Sbjct 2802721 TCTTTGAA--TTTACCTGATTCCATCACATTAACGATATTTAATGAACCTAAATTACATG 2802778 Query 75428 AAATATCTTGACCGATATTATCTGGTTCTTCATAGTCTGTATACTC--TGATACT----- 75480 | || || || || | || |||||| | | ||| || ||||| | Sbjct 2802779 AGATGTC---ACGTTTAATTTC---ATCTTCAGTGCC---ATAATCATTGATAATAGAAG 2802829 Query 75481 TCGC-TGT-ATTGTAAAATTTCACTACAAAGATTAGAGAATTTTACTTTACCTAAATT-- 75536 || | ||| |||| ||||||||| |||| | ||| |||||| ||| | || | Sbjct 2802830 TCTCTTGTAATTGGAAAATTTCAGTACATAAGTTA-CTCATTTTAATTTGTCCAATGTCA 2802888 Query 75537 -ATTTAATGCGTGGTCTTTGTTAACATTATCTTCAAACATAATATAAGGATAGCCACTTT 75595 | ||| || || ||||||| ||||||||| |||||| | ||| ||||| || || Sbjct 2802889 GAGTTA--GCATGCACTTTGTTTGCATTATCTTTAAACATTAAATATGGATAACCTGATT 2802946 Query 75596 CTATTTGAGTTACAGAAATTTGCTCTAATAA--ATCTCTAGGGTCAATTTTTTGCTTTCT 75653 || ||| ||| | ||| || | | || || | | || ||||| |||| | Sbjct 2802947 GTAATTGTGTTTGTGCAAT----CATATTCAGCATTTC-ACGTGCATCTTTTTTCTTTTT 2803001 Query 75654 ---AATTTCTGGGTCGTTAATTAGTTTATCGTACCATTCTTCCATATCAATTTCATCAAT 75710 || | ||||| || |||| |||||| |||| || | | ||| ||||| | Sbjct 2803002 ATCAACATTTGGGTTAGCAACAAGTTCATCGTAATATTCATCTAAGTTAATATCATCTAA 2803061 Query 75711 AGTAACGCCATATTTATCCCATAAATTTTTAG----GATAGAATAAGTACATAGGTTCAT 75766 ||| ||||| |||| | ||||||| | | | | ||| | | || | | | Sbjct 2803062 AGTGACGCCGTATTCTT--TATAAATTGTATGAGGCGCAAACATATGGAAATCTTTGCCT 2803119 Query 75767 TGTTTCTTGCTAACTCAATAAACTTGTCTGGAATAACTACTCCAATAGATAATGTTTTAA 75826 | || |||| | |||| ||||| ||| | || || ||| | || | ||| | Sbjct 2803120 TCTT--TTGCAAGATCAAAGAACTTAGATGGCACAATTAATCCTGTTGAAATTGTAGACA 2803177 Query 75827 CACGTACATCTTCGTCAGCACTAAtttttttAGTGTCTAAGAAATCGTAAATATCAGCAT 75886 ||||| |||||| ||||| | | |||||| || ||||| || || | || |||| | Sbjct 2803178 AACGTAAATCTTCATCAGCGTTTACTTTTTTCGTATCTAAAAACTCTTCAACATCATAGT 2803237 Query 75887 GGAACACATTTAAATA 75902 |||| | ||||||||| Sbjct 2803238 GGAAAATATTTAAATA 2803253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300010873664110