Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq105 125 2e-23 >seq105 Length=1502237 Score = 125 bits (138), Expect = 2e-23 Identities = 267/395 (68%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| || || ||||| ||||||||| | ||||| ||||| || | || | ||| Sbjct 285208 TTTGCAATTTACCTCGAGCCTTGGCATGCTGATATTTTTGAGTTTCTCGATTTGAAAAAA 285267 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| ||| ||||| | | || |||||| | ||||||||| | |||||| | ||| Sbjct 285268 AATACTGGAAAGGAAGAGGTACGGGCCCGTGATCTTTTTTATGCACTTTGGATTCCTGAT 285327 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 || |||||| || | ||| || ||| | ||| ||||||||| || ||| | | Sbjct 285328 TTGTTCATGGAAAGGGTTGAATCTAATAAGAAATGGAGTCTTATGTGCCCGCATAAATGT 285387 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996 |||||||| ||| || | || ||| | ||||| || || || | |||||||||||| Sbjct 285388 CCTGGTCTTCATGACGTCTGGGGTAAAAACTTTGAGGATCTGTATGTAAAATATGAAAAC 285447 Query 110997 GAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAG-AACTT-TGGTTCAAAATCCTTGAAT 111054 ||||| | | ||||||| | |||| ||||| ||| || |||| | Sbjct 285448 GAAGGTCGTTATATACGACAAATT--GACGCAAGAAACTTGTGGAATGCTATAATTGAGT 285505 Query 111055 CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTA 111114 | || || ||||| || |||||| || |||| |||||| || | ||||| | Sbjct 285506 CTCAGGTGGAAACCGGTGTTCCTTACATGCTGTACAAAGATGCGTGCAACAGAAAATCCA 285565 Query 111115 ATCAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149 | ||| |||||| || || ||||| | ||| ||| Sbjct 285566 ACCAACAGAATTTGGGCACCATTAAATGTAGCAAT 285600 Score = 102 bits (112), Expect = 2e-16 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 ||||||| | || | | | || |||||| || |||||||| | |||| | | ||| | Sbjct 284875 TTGCTTTTTACTTGCATTAAAAGATGATAGCATCGAAGGTATCTTTGATACATTAAAACA 284934 Query 110582 AACTGCTCTTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCT 110640 |||| | ||||| ||||||| |||| || ||||| |||||||| ||| |||||| Sbjct 284935 GTCTGCGTTGATTTC-AAAAACTGCTGGTGGTATTGGAATTCACGTACATTGTATTCGGG 284993 Query 110641 CAAAAGG-AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699 ||||||| || | || || | | || || || | |||||||| ||||||||| Sbjct 284994 CAAAAGGCAGTTTA-ATTGCTGGAACAAATGGCATCTCTAACGGACTTGTGCCAATGTTA 285052 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA 110743 ||||| || || | ||||| ||||||| |||| ||||| || Sbjct 285053 AGAGTTTTTAATAATACTGCTCGATATGTGGATCAGGGTGGCAA 285096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186791481133322