Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq46 147 2e-30 seq105 84.2 2e-11 >seq46 Length=4728336 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||||||||| || ||| | ||||| | ||||||||| | Sbjct 1480599 ATGCAAATCTTTGTGAAAACATTAACAGGGAAAACAATCACCTTGGAAGTCGAACCTTCT 1480540 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| |||||| || ||||| ||||| || || |||||| Sbjct 1480539 GATACAATTGAAAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAG 1480480 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | |||| | |||||||||||| ||||||| | | | | |||| |||||| Sbjct 1480479 CAGAGATTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGTACATTATCAG--ATTACA 1480422 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| |||||||||||||| | || | || ||||| | |||||||| Sbjct 1480421 ATATCCAAAAAGAATCCACACTCCACCTTGTTTTAAGGCTCAGAGGAGG 1480373 Score = 123 bits (136), Expect = 2e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || || || || ||| | ||||| |||||||||| |||| Sbjct 1480144 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACTCTCGAAGTCGA-GCCAT 1480086 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| || || | |||||| ||||| |||||||| || || || || |||| Sbjct 1480085 CAGATACCATTGAAAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGATC 1480026 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 ||||||| ||||| | | |||||| ||||| ||||||| | | | || |||||||| Sbjct 1480025 AGCAAAGGCTCATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACACTCTCCGATTACA 1479966 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGAT 25409 ||||||| |||||||| || | || | || | ||| | ||||||| ||| || Sbjct 1479965 ATATTCAGAAAGAATCTACTCTCCACCTCGTACTGAGACTCCGAGGAGGCCAATAAT 1479909 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| || ||| | || || | ||||| ||| ||| | Sbjct 1463882 ATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACAATTACTTTGGAAGTAGAA-CCATC 1463824 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| || || |||||||| ||||| || || ||||| Sbjct 1463823 TGACACAATTGAAAATGTGAAAGCTAAGATCCAGGATAAAGAAGGTATTCCTCCAGATCA 1463764 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| || || | | ||| |||||||| ||||||| | ||| | | ||| ||||| Sbjct 1463763 GCAAAGGCTTATCTTTGCCGGTAAACAACTTGAAGATGGTCGAACTCTTTCCGACTACAA 1463704 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| |||||||| || |||| | || || || | ||||| |||| Sbjct 1463703 CATTCAGAAAGAATCGACACTTCACCTTGTCTTGAGGCTCAGAGGTGGAA 1463654 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||||||||| | || || | |||||||| |||| | Sbjct 1481283 ATGCAAATTTTTGTTAAAACTCTAACCGGAAAGACCATAACTTTAGAAGTCGA-GCCATC 1481225 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || ||| ||||| || ||||| || || || || || || Sbjct 1481224 AGACACTATTGAAAATGTCAAAGCTAAAATACAAGACAAAGAAGGCATTCCCCCAGACCA 1481165 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || |||| | ||| ||||||||||| |||| | | || ||||| || Sbjct 1481164 GCAGAGGCTGATTTTTGCCGGAAAACAACTCGAGGATGGGCGTACGCTCTCAGATTATAA 1481105 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| || | ||||| || | || ||||||||||| Sbjct 1481104 CATTCAAAAGGAATCGACTTTGCATTTGGTTCTCAGGTTGAGAGGAGG 1481057 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| ||||| ||||||| | ||||||||| ||| | Sbjct 1480827 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACGATCACTCTTGAAGTCGAA-CCATC 1480769 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | |||| || || | || ||| |||||| |||||||| ||||| || || || || Sbjct 1480768 GGATACGATTGAAAATGTCAAAGCGAAAATTCAGGATAAAGAAGGTATCCCACCAGACCA 1480709 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||| | | ||| || || | ||||||| | | | | ||||| || Sbjct 1480708 GCAGAGGCTCATCTTTGCCGGTAAGCAGTTAGAAGATGGGCGCACTCTTTCTGATTATAA 1480649 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 || || ||||||||||| ||||| | || |||| Sbjct 1480648 CATCCAGAAAGAATCCACTCTTCATCTTGTCCTAAG 1480613 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || |||||||| || | || || | ||||| || | | Sbjct 1481739 ATGCAGATCTTCGTAAAGACTTTAACCGGCAAGACTATTACACTTGAAGTAGAGCCTTCC 1481680 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||| || |||||||| || || || || |||||| Sbjct 1481679 GACACTATTGAAAATGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCCCCAGATCAG 1481620 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || || ||||| || ||||||| | ||| | || || || Sbjct 1481619 CAGAGGTTGATTTTCGCTGGAAAACAGCTTGAAGATGGTCGAACCCTTTCTGACTATAAC 1481560 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| ||| | || | ||||| |||||||||||||| Sbjct 1481559 ATTCAAAAAGAATCAACCCTCCACCTTGTGTTGAGATTGAGAGGAGG 1481513 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | || ||||| | ||||| | |||||||| ||| Sbjct 1481512 CATGCAGATCTTCGTGAAGACTCTTACAGGAAAGACCATCACTTTGGAAGTCGA-GCCTT 1481454 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| || || | || ||| || ||| |||||||||||||| || || |||| Sbjct 1481453 CTGATACAATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGTATTCCTCCAGATC 1481394 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || | |||| | || || ||||| ||||| | ||| | |||||| | Sbjct 1481393 AGCAGAGGTTGATTTTTGCAGGAAAGCAACTTGAAGACGGCCGAACACTTTCCGATTATA 1481334 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | ||||| |||||||| ||| | ||| | || || |||||| ||||||| Sbjct 1481333 ACATTCAGAAAGAATCTACCCTCCATCTTGTATTGAGATTGCGAGGAGG 1481285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| || || || || ||| | ||||| | || |||||| | | Sbjct 1481055 ATGCAAATATTCGTAAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTCGAACCATCC 1480996 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || ||| |||||||| || || || || ||||| Sbjct 1480995 GACACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1480936 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || || ||||| | ||||||| | | | | || |||||| Sbjct 1480935 CAGAGGTTAATCTTCGCTGGAAAACAGTTGGAAGATGGACGCACTCTTTCGGACTACAAT 1480876 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||||||| |||| | || || || |||||||||| Sbjct 1480875 ATTCAAAAAGAATCCACCCTTCACCTCGTTTTGAGGCTGAGAGGAGG 1480829 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| ||||| | ||||| |||||||||| |||| | Sbjct 1480371 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACAATCACCCTCGAAGTCGA-GCCATC 1480313 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| || ||| ||||| || || || || || || || Sbjct 1480312 TGACACCATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAAGGGATCCCTCCAGACCA 1480253 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | |||| | || || ||| | ||||| | | | | |||||||| Sbjct 1480252 GCAGAGGTTAATTTTTGCTGGAAAGCAATTGGAAGACGGACGCACACTTTCGGATTACAA 1480193 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||||||||| ||||| | || || || | ||||| || Sbjct 1480192 CATCCAGAAAGAATCCACTCTTCATCTTGTCTTGAGGCTCAGAGGCGG 1480145 >seq105 Length=1502237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 136986 TACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAA 137045 ||| ||| |||| || ||||||||||| | | ||| | ||| | ||| |||| || || Sbjct 287927 TACCTGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAA 287868 Query 137046 CGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAA 137105 ||||| || || || | |||||| || || | ||||| ||||| ||||||||| | Sbjct 287867 AGATTCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAG 287808 Query 137106 TGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT 137164 ||||||| | ||| || || | || | ||||| | ||||||| ||| |||| Sbjct 287807 GGAATTCCTAACACCATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGAT 287749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086599720640