Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq105 167 3e-36 seq13 86.0 9e-12 >seq105 Length=1502237 Score = 167 bits (184), Expect = 3e-36 Identities = 301/436 (69%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 69297 TACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGT 69356 |||||||| | | || ||||| || ||| |||||||| ||||| |||||||| || || Sbjct 285642 TACCTCATCTGCAGATGTATATTCTACTATTTCTGTACAAAGATTGCTACATTTAATGGT 285583 Query 69357 CCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGT 69416 |||| ||| || || || ||| |||| || || || ||||| || || | ||| Sbjct 285582 GCCCAAATTCTGTTGGTTGGATTTTCTGTTGCACGCATCTTTGTACAGCATGTAAGGAAC 285523 Query 69417 ACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGT 69476 ||| ||||| | |||||| || || |||| ||||| | | || || | ||| || Sbjct 285522 ACCGGTTTCCACCTGAGACTCAATTATAGCATTCCACAAGTTTCTTGCGTCAATTT--GT 285465 Query 69477 CTTGTA--ACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAA 69534 | | || ||| || |||||||||| | ||| || || || | | ||||| Sbjct 285464 CGTATATAACGACCTTCGTTTTCATATTTTACATACAGATCCTCAAAGTTTTTACCCCAG 285405 Query 69535 ACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC--ATCATCCT 69592 || |||| | |||||||||| || || ||||| | ||| || || || | | Sbjct 285404 ACGTCATGAAGACCAGGACATTTATGCGGGCACATAA--GACTCCATTTCTTATTAGATT 285347 Query 69593 TAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTAT 69652 ||| | || ||| || | ||| ||||||||||| || ||| ||||| | || | Sbjct 285346 CAACCCTTTCCATGAACAAATCAGGAATCCAAAGTGCATAAAAAAGATCACGGGCCCGTA 285287 Query 69653 TTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATG 69712 ||||| ||||| ||||||||||| | |||||||||||| | |||||||| |||||| | Sbjct 285286 CCTCTTCCTTTCCAGTATTTTTTTTCAAATCGAGAAACTCAAAAATATCAGCATGCCAAG 285227 Query 69713 GTTCTAGATATATCGC 69728 | || || || || || Sbjct 285226 GCTCGAGGTAAATTGC 285211 Score = 149 bits (164), Expect = 9e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| ||||||| |||||| | |||||||| ||| |||| || ||||| | |||| Sbjct 287923 TGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAAAGAT 287864 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| || ||||| ||||| || ||||| || ||||| || || | ||| | | Sbjct 287863 TCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAGGGAA 287804 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || |||| |||||| || ||||| ||||| ||| ||||| ||||| ||||||||| Sbjct 287803 TTCCTAACACCATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGATCAGAT 287744 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 || || ||| | ||||||||| | ||| Sbjct 287743 GGAGTCACTCCCCACATATCGTATTGCAAAAT 287712 Score = 105 bits (116), Expect = 9e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 ||||| || |||||||| | |||| ||||| |||||| | ||||| | ||| || | | Sbjct 285099 TTATTGCCACCCTGATCCACATATCGAGCAGTATTATTAAAAACTCTTAACATTGGCACA 285040 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTA-CT 69863 | || ||||| | ||||||||||||| ||| |||| ||| |||| |||||| | | Sbjct 285039 AGTCCGTTAGAGATGCCATTTGTTCCAGCAATTAAACTGCCTTTTGCCCGAATACAATGT 284980 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 | || | || || || || || |||| || || | ||| | |||| ||||| || Sbjct 284979 ACGTGA-ATTCCAATACCACCAGCAGTTTTTGAAATCAACGCAGACTGTTTTAATGTATC 284921 Query 69924 ATATATACCCTCTATGCTATCATCT 69948 | | ||||| || |||||||||||| Sbjct 284920 AAAGATACCTTCGATGCTATCATCT 284896 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||| | || ||||| | ||| || || || || ||||| || ||||||||| |||||| Sbjct 284751 GTTGCAGCGTTAAAAAGTGTGGGGGAGGCATGTGTGAAATATCCTTCAGAAAGTAGATTG 284692 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||||||| || | || || || ||||||||| |||||||| | ||||||| Sbjct 284691 TAAGTTTCAATTGCAGCGTCAATGTCTTCTCCATGAATTCCAATCGCGACTCTCATCAAC 284632 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||||||||||| || || |||| || | || | |||||||| |||| || Sbjct 284631 ATATGCTGAGGTCTCTCGACAATTTTGTTTCTGATGCGAAGAAGGTATGACCTTTCAAGC 284572 Query 70171 GT 70172 || Sbjct 284571 GT 284570 >seq13 Length=9188118 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40094 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTG 40153 || ||| | ||||| | ||| |||||||| ||||||||||||| || || ||||||||| Sbjct 3474985 TTAATAACCTTTGAAAGATCGACTTCTTCTACTGTCCAAAACGATGCTTCGGCCTTTTTG 3475044 Query 40154 TACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 ||||| ||||||| || | || | || ||||| || ||||| || Sbjct 3475045 TACATTCTCCATATGTCGTGGTACTCGATCGGAAACATGACAAACCT 3475091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686896761923280