Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_027404.1 Length=167785 Score E Sequences producing significant alignments: (Bits) Value seq89 93.3 5e-14 >seq89 Length=3091062 Score = 93.3 bits (102), Expect = 5e-14 Identities = 182/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 41574 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 41633 ||||||||||||||| ||||| | | ||||||| || | || || |||||||| || Sbjct 556795 AATATCAGGATACATTCTTTTAGTAGAGCACTCTAATGCTAATTGTTTTATATCATAATT 556736 Query 41634 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 41693 |||||| | | || ||| || |||| || || | | ||||| || ||||| || Sbjct 556735 CGGATCTTTCGAACTAAAATTCACGCCTTTTTTAATTGAAAACACAAGTTTTGGGAAGAT 556676 Query 41694 AGGAGTTATCCCATCACGGCCAAGACCTTTAATGCGATTTTTCAGAATTGCTTTCTGAAT 41753 | ||| || | ||| || | |||||| || | | | || |||||||||| || || Sbjct 556675 GGCAGTAATACGATCTTTACCCAAACCTTTGATTCTAGTGTTAAGAATTGCTTGTTGGAT 556616 Query 41754 CATTCGTTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCC 41813 | || | || ||||| |||||| | |||||||||||| ||||| || Sbjct 556615 TTTACGGCTATATGTATCTGTTCCTAATCCAAATCCTAATGTTACAAAAGGTGTTTGACC 556556 Query 41814 GTTTGAACTGAATAACGTGTTCACTTCAT 41842 ||||| | | || ||||| | ||||| Sbjct 556555 ATTTGATGTATACAATGTGTTAATTTCAT 556527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536774592860400