Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 172 4e-38 seq13 118 8e-22 seq40 89.7 4e-13 >seq3 Length=17889087 Score = 172 bits (190), Expect = 4e-38 Identities = 246/344 (72%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||| |||||||| ||||||||||||||||||| | | ||||| ||||| | ||| | Sbjct 15711935 AGGGGATCTTGGGCCTGTTTATGGATTTCAGTGGAGGCATTTCGGAGCCGATTATAAAGA 15711994 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 ||| || | ||||| || |||| | || |||||| | || ||| | || || Sbjct 15711995 CATGCACACAGATTACACAGGACAAGGTGTCGACCAATTAATGGCTGTAATAAACACTAT 15712054 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 |||| || ||||| || |||| | || || ||||||| ||||| || | | | || | Sbjct 15712055 TAAAACCAATCCCAATGACCGAAGGATGATTATGTGCGCCTGGAATCCTATGCATTTAGA 15712114 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAAC 41103 |||||| | || ||||| || ||||| || || ||||| ||| ||||| ||| Sbjct 15712115 CAAGATGGCTCTACCCCCTTGCCA-TTGTTTGGTACAATTTTATGTTGCAAATGGCGAAT 15712173 Query 41104 TGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAG 41163 | || || || ||||||| ||||| | |||||||| |||| || || |||||||| | Sbjct 15712174 TATCTTGCCAGCTGTATCAGAGATCGGCAGACATGGGCTTAGGAGTTCCATTTAACATTG 15712233 Query 41164 CGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 | || |||||||| | || || |||||||| || ||||| ||| Sbjct 15712234 CAAGCTATGCTCTTTTAACATACATGATTGCTCATGTTACAAAT 15712277 >seq13 Length=9188118 Score = 118 bits (130), Expect = 8e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||||| || ||||| ||||| |||||||| || ||||||||| | || |||||| Sbjct 3474882 GTTTTAGCATTTTTCGCTGCATCGGACGGGATTGTAAATGAAAATCTTGTCGAACGGTTT 3474823 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | |||||||| ||| | | ||||| | ||||| || || ||||| || || |||||| Sbjct 3474822 TCTCAAGAAGTCCAAGTGACTGAAGCGAGGTGTTTCTACGGTTTTCAGATCGCAATAGAA 3474763 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 3474762 AATATCCATTCCGAAATGTATTCACTTCTAATCGATACTTACATC 3474718 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 ||||||||| ||||||| || | || || ||||||||| |||||||||||| || | Sbjct 3475091 AGGTTTGTCATGTTTCCGATCGAGTACCACGACATATGGAGAATGTACAAAAAGGCCGAA 3475032 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 || || |||||||||| ||||||||| ||| Sbjct 3475031 GCATCGTTTTGGACAGTAGAAGAAGTCGAT 3475002 >seq40 Length=4780559 Score = 89.7 bits (98), Expect = 4e-13 Identities = 187/278 (67%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || ||||| || | || | | ||||| || || | || |||| |||| Sbjct 928272 CCAAAGATAGTCAATGGCCCACAGATTCTGGACAAATACGTTGGCGAGTCTGAAGCAAAT 928331 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 |||| || | |||||||| || || ||||| | || || | || || ||| Sbjct 928332 ATACGCCGACTTTTTGCTGAAGCCGAGGAAGAGGAGAAGCGCCTCGGCGTGAACAGTGGC 928391 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 |||| ||||||||||| ||||| |||| || || |||||| |||| || | || | Sbjct 928392 CTGCATATTATAATACTTGATGAGATGGATGCGATATGTAAGTCGCGAGGGTCCGTTGGA 928451 Query 19609 ------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || ||||||||||| || || || || || || || || ||||||| || Sbjct 928452 GGCAACACGGGTGTACATGACACGGTCGTGAACCAGCTACTTTCGAAGATAGACGGCGTC 928511 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 |||| || || || || | | || |||||||| || Sbjct 928512 GACCAGCTTAACAACATACTCATAATAGGCATGACAAA 928549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449208719010