Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq570 105 8e-18 seq127 95.1 2e-14 seq105 84.2 3e-11 >seq570 Length=38645 Score = 105 bits (116), Expect = 8e-18 Identities = 213/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 11428 TGGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAG 11487 |||| |||| ||||| || | | ||||||||||||||| || | | || ||| | Sbjct 30153 TGGACGACCTACTTGAATTTGTCTATCAAAACGACCCGGACGTAATAATGCTGGATCTAA 30094 Query 11488 GATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCA---AAGCC 11544 || || || ||||| || || || | | ||||| || || ||| || || Sbjct 30093 AATGTCAGGACGGTTAGTAGCAGCTATCATAATGATGCCT---TCGTTTTCACCAAATCC 30037 Query 11545 ATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG-GCATAC 11603 |||||| || | ||||||||| | ||||||||| | ||||| | | || || Sbjct 30036 ATCCATTTCAACTAATAATTGATTCAATGTTTGTTCACGTTCATCGTGGCCACCGCCGAC 29977 Query 11604 CACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTT 11663 |||||||| ||||| || || |||||||| || |||||||| | ||||| || Sbjct 29976 -ACCAGCACCACGTTGACGTCCAACTGCATCAATTTCGTCAATGAAAATGATACAAGGCG 29918 Query 11664 GATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACA 11723 ||||| || ||||||| | ||| || || | | ||||| ||||||||||||| Sbjct 29917 CATTTTTCTTAGCATTTTCAAATAAATCACGTACACGGCTTGCACCGACACCAACAAACA 29858 Query 11724 TCTCCACAAAGT 11735 |||| ||||||| Sbjct 29857 TCTCAACAAAGT 29846 >seq127 Length=259506 Score = 95.1 bits (104), Expect = 2e-14 Identities = 253/381 (66%), Gaps = 18/381 (5%) Strand=Plus/Minus Query 11443 GATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATT 11502 ||||| || ||||||||||| || | ||| || || ||| | | ||| ||||| Sbjct 119295 GATCTGACGGTCAAAACGACCAGGTCTAAGCAGAGCTGGATCTAAAACATCTGGACGATT 119236 Query 11503 AGTGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAG 11559 || || |||| | | || || ||||| ||||| |||||||| || | Sbjct 119235 GGTTGCAGCAA---CTATTATCACACCTTCATTAGACTCAAAACCATCCATTTCAACTAA 119179 Query 11560 TAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTG---CG 11616 ||| ||||| | ||||||||||| |||||| |||| | |||| | || || || Sbjct 119178 TAACTGATTTAACGTTTGTTCTCTTTCATCA-TTGCCACC--ACCAAGACCAATGCCACG 119122 Query 11617 TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG---TTGATTTTCGCG 11673 ||| | ||||| || || |||||||| ||||| | ||||| || || || | || Sbjct 119121 ATGCCTACCCACTGCGTCTATCTCATCTATGAAAATTATACACGGAGCGTGTTTCTTGC- 119063 Query 11674 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 | || || | |||||| || | | ||||| |||||||||||||| || ||||| Sbjct 119062 --CTTGATCGAACATATCGCGTACACGGCTTGCACCAACACCAACAAACATTTCGACAAA 119005 Query 11734 GTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | | ||||| | ||||| ||||| | ||||| || || || || || || Sbjct 119004 ATCAGATCCAGAGATGCTAAAAAATGGCACATTAGCCTCACCTGCAATCGCACGAGCAAG 118945 Query 11794 GAGGGTCTTTCCCGTACCTGG 11814 |||||||| || || || || Sbjct 118944 TAGGGTCTTACCAGTTCCAGG 118924 >seq105 Length=1502237 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 ||| || |||| ||||||||||| | ||| || ||||| || |||||||||| ||| Sbjct 285627 TGTATATTCTACTATTTCTGTACAAAGATTGCTACATTTAATGGTGCCCAAATTCTGTTG 285568 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| || ||||||||||||| ||||| |||||||| || || || ||| ||| Sbjct 285567 GTTGGATTTTCTGTTGCACGCATCTTTGTACAGCATGTAAGGAACACCGGTTTCCACCTG 285508 Query 111397 TGATTTGAGAATAGCCTTCCA 111417 || | | ||||| ||||| Sbjct 285507 AGACTCAATTATAGCATTCCA 285487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020993739200