Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq46 120 2e-22 seq69 98.7 6e-16 >seq46 Length=4728336 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | ||| ||||||||||||||||||||||| || || ||| | || || Sbjct 1481075 ACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGAGAGCGTACGCCCATCCTCG 1481134 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| |||||||| || | | ||| ||||| || || | || || |||||| || Sbjct 1481135 AGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT-TG 1481193 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| | ||| || | ||| |||||| ||| ||||| | ||||| || || Sbjct 1481194 TATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGACTTCTAAAGTTATGGTCTT 1481253 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||||| |||||||| ||||| Sbjct 1481254 TCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || ||||| |||||||||||||||||||| || Sbjct 1481741 CCACCTCTGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGAATGTTATAATCCGAG 1481800 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || |||||||| || || || || || | | |||||||| ||||| Sbjct 1481801 AGAGTTCTACCATCCTCAAGTTGCTTGCCAGCGAAAATCAGCCTTTGTTGGTCTGGCGGG 1481860 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||| | || || | |||||| ||| ||| || Sbjct 1481861 ATACCTTCTTTGTCCTGGAT-TTTGGCCTTCACATTCTCAATTGTATCTGAAGGCTCAAC 1481919 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| ||||| || ||||||||||| |||||||| Sbjct 1481920 TTCCAATGTGATGGTTTTTCCGGTCAAAGTTTTCACAAAGATCTGCAT 1481967 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||||||||| || | ||| || | ||| |||||| || || || ||||| ||||| || Sbjct 1480144 GCCGCCTCTGAGCCTCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCCGA 1480203 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||| || ||||||| | ||| || || ||||| ||||| | ||| ||||| || || Sbjct 1480204 AAGTGTGCGTCCGTCTTCCAATTGCTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGAGG 1480263 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || ||||| || ||||| | ||| || || ||| ||||| ||| | Sbjct 1480264 GATCCCTTCCTTATCCTGAATCTTA-GCTTTGACATTATCAATGGTGTCAGATGGCTCGA 1480322 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || || || || ||||| ||||||||||| || ||||| Sbjct 1480323 CTTCGAGGGTGATTGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480371 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || || | ||||| ||| || ||||| || || |||||||| Sbjct 1480373 CCTCCTCTGAGCCTTAAAACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 1480432 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | |||||||||||||| |||||||| || || | ||| || || || || Sbjct 1480433 AATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAATCTCTGCTGATCTGGAGGG 1480492 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | ||| ||| | |||||| || || || Sbjct 1480493 ATACCTTCTTTGTCT-TGAATTTTAGCTTTTACGTTTTCAATTGTATCAGAAGGTTCGAC 1480551 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || ||||| || ||||| ||||||||||| || ||||| Sbjct 1480552 TTCCAAGGTGATTGTTTTCCCTGTTAATGTTTTCACAAAGATTTGCAT 1480599 Score = 105 bits (116), Expect = 4e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||| || | |||||| || || || |||||||||||||| ||||||||||| |||| Sbjct 1481299 CAATACAAGATGGAGGGTAGATTCTTTCTGAATGTTATAATCGGAAAGTGTTCGGCCGTC 1481358 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||||||||| || || ||||| || || | ||| || || || || | ||||| || || Sbjct 1481359 TTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCCTCTTTATC 1481418 Query 34614 TGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 | ||| || | |||||| | |||||| || ||| ||||||| || || | Sbjct 1481419 T-TGAATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGCTCGACTTCCAAAGTGATGG 1481477 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || | || ||||| || ||||||||| Sbjct 1481478 TCTTTCCTGTAAGAGTCTTCACGAAGATCTGCATG 1481512 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | ||| || | || || || || || |||||||| || || ||| Sbjct 1463656 CCACCTCTGAGCCTCAAGACAAGGTGAAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAA 1463715 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||||||||||||||||||||| || | | || || || || || Sbjct 1463716 AGAGTTCGACCATCTTCAAGTTGTTTACCGGCAAAGATAAGCCTTTGCTGATCTGGAGGA 1463775 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC--TTCGCTCTCCA 34657 | || || || || |||||| ||| | | ||||||||| | | ||| | Sbjct 1463776 ATACCTTCTTTATCCTGGATCTTAGCTTTCACATTTTCAATTGTGTCAGATGGTTCT--A 1463833 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 1463834 CTTCCAAAGTAATTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCAT 1463882 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | | |||||| | ||||| || || |||||||||||||| || || Sbjct 1481512 GCCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGA 1481571 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| ||||| | |||||||| ||||| || || || || || | ||| || || || || Sbjct 1481572 AAGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGGGG 1481631 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||||||| || | | ||| ||||| ||| || Sbjct 1481632 GATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTAC 1481691 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || |||||||| || || || || |||||||| Sbjct 1481692 TTCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739 Score = 91.5 bits (100), Expect = 9e-14 Identities = 119/160 (74%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 34550 CGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCT 34609 ||||||||||||| || || ||||| || || | ||| || || || || | ||||| | Sbjct 1463498 CGTCTTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCCTCTT 1463557 Query 34610 TGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC--TTCGCTCTCCACTTCCACGG 34666 | ||| ||| || | |||||| | ||||||||| | | ||| ||||||| || Sbjct 1463558 TATCT-TGAATCTTAGCTTTAACATTTTCAATTGTGTCAGATGGTTCT--ACTTCCAAGG 1463614 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || |||||||| ||||| ||||| |||||||| ||||| Sbjct 1463615 TGATTGTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 1463654 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| |||||| || || || ||||||||||| ||||| || ||| | ||||| | || Sbjct 1480624 ATGAAGAGTGGATTCTTTCTGGATGTTATAATCAGAAAGAGTGCGCCCATCTTCTAACTG 1480683 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||||||||| || | | ||| ||||| || || | || || || || ||| || Sbjct 1480684 CTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCTTCTTTATC-CTGAATTT 1480742 Query 34623 TTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTTTACC 34679 | | ||| || | ||| || || || | || ||||| | || ||||| || || Sbjct 1480743 TCGCTTTGACATTTTCAATCGTATC--CGATGGTTCGACTTCAAGAGTGATCGTCTTTCC 1480800 Query 34680 GGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||||||||| || ||||| Sbjct 1480801 TGTTAAAGTTTTCACAAAGATTTGCAT 1480827 >seq69 Length=2547145 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| || || ||||| || | ||||||| || || || ||||| || Sbjct 1551503 CCTTTCTGGATGTTGTAGTCCGAAAGAGTCCTGCCGTCTTCGAGCTGCTTCCCGGCGAAA 1551562 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | |||||||||||| || | |||||||| ||| |||||| ||| | | Sbjct 1551563 ATCAACCTCTGTTGGTCCGGTGGGATACCCTCCTTATCTTGGATCTTGGCTTTGACATTT 1551622 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||||||||| ||| || || | ||| || || || || |||| || |||||| Sbjct 1551623 TCAATTGTGTCAGACTGCTCGACCTCAAGGGTGATTGTCTTGCCCGTTAGGGTCTTCACA 1551682 Query 34696 AAAATCTGCATGTT 34709 ||||||||||| || Sbjct 1551683 AAAATCTGCATCTT 1551696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724222254666