Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq46 149 5e-31 seq74 95.1 1e-14 >seq46 Length=4728336 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||| | ||||||||| ||||||| |||||||| || || ||| Sbjct 1481739 ATGCAGATCTTCGTAAAGACTTTAACCGGCAAGACTATTACACTTGAAGTAGAGCCTTCC 1481680 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| || ||||| |||||||| || || || ||||| Sbjct 1481679 GACACTATTGAAAATGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCCCCAGATCAG 1481620 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || ||||| | ||||| || ||| |||| || || ||| Sbjct 1481619 CAGAGGTTGATTTTCGCTGGAAAACAGCTTGAAGATGGTCGAACCCTTTCTGACTATAAC 1481560 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | || | || ||| | ||| | || ||||| Sbjct 1481559 ATTCAAAAAGAATCAACCCTCCACCTTGTGTTGAGATTGAGAGGAGGCAT 1481510 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||| ||| |||| ||||| | || |||||||| || ||||| ||| Sbjct 1481055 ATGCAAATATTCGTAAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTCGAACCATCC 1480996 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| || ||||||||||| ||||| |||||| Sbjct 1480995 GACACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1480936 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | ||| || ||||| |||||||| | || |||| || ||||| Sbjct 1480935 CAGAGGTTAATCTTCGCTGGAAAACAGTTGGAAGATGGACGCACTCTTTCGGACTACAAT 1480876 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| || || ||| | || | |||||| Sbjct 1480875 ATTCAAAAAGAATCCACCCTTCACCTCGTTTTG 1480843 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| ||||| ||| | || ||| | ||||| || || || Sbjct 1481283 ATGCAAATTTTTGTTAAAACTCTAACCGGAAAGACCATAACTTTAGAAGTCGAGCCATCA 1481224 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||| ||||||||||||||||| || || || || Sbjct 1481223 GACACTATTGAAAATGTCAAAGCTAAAATACAAGACAAAGAAGGCATTCCCCCAGACCAG 1481164 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| |||||| | || || | || | || ||||| ||| Sbjct 1481163 CAGAGGCTGATTTTTGCCGGAAAACAACTCGAGGATGGGCGTACGCTCTCAGATTATAAC 1481104 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| ||||| || ||||||||| Sbjct 1481103 ATTCAAAAGGAATCGACTTTGCATTTGGTT 1481074 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| | || || ||| | || ||||||||||| ||||| || Sbjct 1480827 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACGATCACTCTTGAAGTCGAACCATCG 1480768 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | |||||| |||||||| || |||||||| || ||||| || || Sbjct 1480767 GATACGATTGAAAATGTCAAAGCGAAAATTCAGGATAAAGAAGGTATCCCACCAGACCAG 1480708 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || || || ||||| | || |||| ||||| ||| Sbjct 1480707 CAGAGGCTCATCTTTGCCGGTAAGCAGTTAGAAGATGGGCGCACTCTTTCTGATTATAAC 1480648 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || || || || Sbjct 1480647 ATCCAGAAAGAATCCAC 1480631 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| ||||||| || | || || | ||||| || || || Sbjct 1481967 ATGCAGATCTTTGTGAAAACTTTGACCGGAAAAACCATCACATTGGAAGTTGAGCCTTCA 1481908 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||| || ||||||||||| || || || || ||| Sbjct 1481907 GATACAATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGTATCCCGCCAGACCAA 1481848 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| ||||| ||| | || || || || | || ||||| ||| Sbjct 1481847 CAAAGGCTGATTTTCGCTGGCAAGCAACTTGAGGATGGTAGAACTCTCTCGGATTATAAC 1481788 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||||| | || ||||| | ||| | | ||||| || Sbjct 1481787 ATTCAAAAGGAATCGACTCTGCACTTGGTCCTCCGTCTCAGAGGTGGGAT 1481738 Score = 111 bits (122), Expect = 1e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 27030 CTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAA 27089 ||||| || ||||| |||||| | ||||| | || || || ||||| || |||||| Sbjct 1464068 CTTGAGGTCGAACCATCCGACACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAA 1464009 Query 27090 GGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG 27149 ||||| ||||| ||||||||| | ||||| | |||||| ||||| |||||||| | Sbjct 1464008 GGCATCCCACCAGATCAACAGAGGTTAATCTTCGCCGGAAAACAGTTGGAAGATGGACGC 1463949 Query 27150 ACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || |||| ||||| |||||||| || || || || | ||| | || ||| Sbjct 1463948 ACTCTTTCGGATTATAACATTCAGAAAGAATCAACACTTCATCTTGTCTTG 1463898 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || ||| |||| ||||| | || ||||| ||||| || || Sbjct 1480147 CGGCATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACTCTCGAAGTCGAGCC 1480088 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || || | ||||| | || ||| ||||| ||||| |||||||| || || || || Sbjct 1480087 ATCAGATACCATTGAAAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGA 1480028 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| || | | || | |||||||| ||| ||||||| || || | |||||||| Sbjct 1480027 TCAGCAAAGGCTCATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACACTCTCCGATTA 1479968 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 ||| ||||| || || || || Sbjct 1479967 CAATATTCAGAAAGAATCTAC 1479947 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| | || || ||| | || || || ||||| || || || Sbjct 1480371 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACAATCACCCTCGAAGTCGAGCCATCT 1480312 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||| || || ||||| || || || || || Sbjct 1480311 GACACCATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAAGGGATCCCTCCAGACCAG 1480252 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | || || || |||||||||||| | || |||| ||||||||| Sbjct 1480251 CAGAGGTTAATTTTTGCTGGAAAGCAATTGGAAGACGGACGCACACTTTCGGATTACAAC 1480192 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || || || || || | ||| | || ||| Sbjct 1480191 ATCCAGAAAGAATCCACTCTTCATCTTGTCTTG 1480159 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | || || || | || || | ||||| ||||| || Sbjct 1480599 ATGCAAATCTTTGTGAAAACATTAACAGGGAAAACAATCACCTTGGAAGTCGAACCTTCT 1480540 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||||||||| || || || ||||| Sbjct 1480539 GATACAATTGAAAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAG 1480480 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||||||| | ||||| || || | || |||||||| Sbjct 1480479 CAGAGATTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGTACATTATCAGATTACAAT 1480420 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||| || || || Sbjct 1480419 ATCCAAAAAGAATCCAC 1480403 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | || || || | |||||| | ||||| ||||| || Sbjct 1463882 ATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACAATTACTTTGGAAGTAGAACCATCT 1463823 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || || |||||||| || || || ||||| Sbjct 1463822 GACACAATTGAAAATGTGAAAGCTAAGATCCAGGATAAAGAAGGTATTCCTCCAGATCAG 1463763 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| |||||| | ||||| || || ||||||| |||||| Sbjct 1463762 CAAAGGCTTATCTTTGCCGGTAAACAACTTGAAGATGGTCGAACTCTTTCCGACTACAAC 1463703 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| || || ||||| Sbjct 1463702 ATTCAGAAAGAATCGAC 1463686 >seq74 Length=3691182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 |||| || ||||||||||| ||||| | || |||||||| |||| || | || | | Sbjct 1881768 TAGGCTGCATGTGGTCTATATGCGGCATCCATGATCAAGGTTGGAGAGAAAGGGAAATCT 1881827 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 |||| || |||||||| ||||||||| | || ||| |||||||||| ||||||| Sbjct 1881828 TTGGTAAAATTCGCTACATGAACTATCAGGGCTGTGAAAGAAAATTTGATGTAAA 1881882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434910778055040