Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq157 152 1e-32 seq43 93.3 1e-14 >seq157 Length=245904 Score = 152 bits (168), Expect = 1e-32 Identities = 281/406 (69%), Gaps = 11/406 (3%) Strand=Plus/Plus Query 32872 CGCGATGGTGAGTTGTTGCAGGTCAAGAGAATCAGCACCGAACGTCCGGACGGGAAGAAA 32931 ||||| ||||||||| ||| |||| | | | | || |||| ||||| || ||| Sbjct 41837 CGCGACGGTGAGTTGAAGCAAATCAAACGGTTGGGGATTGAGCGTCATGACGGTAAAAAA 41896 Query 32932 GTCATCATGGCAGAAGGTGACTGTGAACCCTGTCTGTTCGGATGGCAGGCTCTCGATGCT 32991 |||||||||| || || ||||||||||||||||| || |||||||| || | | Sbjct 41897 ATCATCATGGCGGAGTCCGATTGTGAACCCTGTCTGTTTGGCTGGCAGGCCATCAACCCC 41956 Query 32992 GGCGTGAGGGC-----GGTTGTGCTTTGCGAAGGCGAAATTGATTGCATGAGCTATGC-G 33045 | || || ||| ||| |||| |||||||||||||| |||||| ||| | Sbjct 41957 AAAG--AGCGCAATCTGGTGGTGATTTGTGAAGGCGAAATTGACGCCATGAG-TATTCAC 42013 Query 33046 CAATACGGAATTCCGACGCTATCTGTCCCGTTCGGTGGCGGGAAAGGCGCTAAGCAACAG 33105 || ||||| ||||| | || || || || ||||||||||| | || || ||||| ||| Sbjct 42014 CAGTACGGCCTTCCGGCACTGTCGGTTCCCTTCGGTGGCGGAACGGGGGCCAAGCAGCAG 42073 Query 33106 TGGATTGAGTTTGAATACCATAACCTCGACAGGTTT-GAAGAAATATTCATTTCGATGGA 33164 ||||||||| ||| ||| | || || | || |||| ||||| |||||| | | ||||| Sbjct 42074 TGGATTGAGCATGAGTACGAAAATCT-GTCACGTTTCGAAGAGATATTCCTGTGCATGGA 42132 Query 33165 CGGTGATGATGTTGGTCGTGAAGCTGCAAGGGAAATCGCAAGCCGACTCGGTGAACATCG 33224 | || | | || | || || | |||||| || | ||| || || ||||| Sbjct 42133 CATGGACGCCGCCGGGCAATCCGCCGCCAAGGAAATTGCTACCCGTCTGGGGATCCATCG 42192 Query 33225 CTGCCGTCTGGTTACACTGCCACACAAAGATATCAACGAATGCCTG 33270 ||| | | || | ||| || ||||| || |||||||||||| Sbjct 42193 TTGCAGCTTTGTGAAACTCCCTCACAAGGACGCTAACGAATGCCTG 42238 >seq43 Length=4351604 Score = 93.3 bits (102), Expect = 1e-14 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 40252 ATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTT 40311 |||| ||| |||| || || || || || || |||||| | |||||||||||||| || | Sbjct 2763244 ATTACCGATAACTTTTGAGTGAATCCGATATTAAGAGCTCTGTAGCCTTTTTTAAGATGT 2763185 Query 40312 CATTTTCCATTTCAATACGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCG 40371 ||| |||||||||| |||| | |||||| | | ||| || |||||||| ||| | Sbjct 2763184 TATTCTCCATTTCAAGGTGTTGAATTTTTTTCTTCATTACACTGAGTTCAATTTATTCTG 2763125 Query 40372 G-GGTAATGGGGGAGGCTTTTGGTGTTTTGCCC-TGCCGCTCATCACGTAATTGTTTCAC 40429 | | |||| | | || |||||||||| ||| || |||| || | || ||| | Sbjct 2763124 GAGTTAATAGAAG-CCCTGTTGGTGTTTTTCCCTTGACGCT-ATAAACAAAGAGTT--CC 2763069 Query 40430 CCATCGCGTCATTGTGGAAAGGCCGACATCCAT 40462 |||||| | || | ||||||| |||| ||| Sbjct 2763068 CCATCGACTAATGGCTGAAAGGCTCACATTCAT 2763036 Score = 93.3 bits (102), Expect = 1e-14 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 17627 ATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTT 17686 |||| ||| |||| || || || || || || |||||| | |||||||||||||| || | Sbjct 2763244 ATTACCGATAACTTTTGAGTGAATCCGATATTAAGAGCTCTGTAGCCTTTTTTAAGATGT 2763185 Query 17687 CATTTTCCATTTCAATACGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCG 17746 ||| |||||||||| |||| | |||||| | | ||| || |||||||| ||| | Sbjct 2763184 TATTCTCCATTTCAAGGTGTTGAATTTTTTTCTTCATTACACTGAGTTCAATTTATTCTG 2763125 Query 17747 G-GGTAATGGGGGAGGCTTTTGGTGTTTTGCCC-TGCCGCTCATCACGTAATTGTTTCAC 17804 | | |||| | | || |||||||||| ||| || |||| || | || ||| | Sbjct 2763124 GAGTTAATAGAAG-CCCTGTTGGTGTTTTTCCCTTGACGCT-ATAAACAAAGAGTT--CC 2763069 Query 17805 CCATCGCGTCATTGTGGAAAGGCCGACATCCAT 17837 |||||| | || | ||||||| |||| ||| Sbjct 2763068 CCATCGACTAATGGCTGAAAGGCTCACATTCAT 2763036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132157799701200