Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq89 152 5e-32 >seq89 Length=3091062 Score = 152 bits (168), Expect = 5e-32 Identities = 304/447 (68%), Gaps = 19/447 (4%) Strand=Plus/Minus Query 42488 ATTCCAGGGCTATTCTAGGAAGATTTAAAGTGACAACACCCAAATTATTCCTTCCAT--- 42544 |||| | ||||||||||| | |||||| || |||||||| |||||| ||||||| Sbjct 556958 ATTCAATTGCTATTCTAGGCACATTTAATGTCACAACACCTAAATTACATCTTCCATTAT 556899 Query 42545 -CTAAAATTTCTTGTCCATTTTCTTTAT---AAACCGATAAAAAACTACGACAACCCATA 42600 || ||||| |||| |||| || | || | | ||||| |||||||||||| Sbjct 556898 TCTCAAATTC----TCCAATTTCGTTCTTCCAAGCTGGCAAAAACGAACGACAACCCATC 556843 Query 42601 GGAGAAACAGGAATAGAACTTCCAGTTATTTCTTTATTAATTTTAGAAGAAATAATATCA 42660 |||| || || || ||||||| | | | | || | ||||||| Sbjct 556842 GGAGCTT------TAAAATCACCTAATATTTCTACCGTTTTATCATAATTCAAAATATCA 556789 Query 42661 GGGTACATTCTTTTAGCCGAACATTCTAGAGCTAAtttttttATAGAATAATTAGGGTCT 42720 || ||||||||||||| || || |||| ||||||| ||||||| |||||| || ||| Sbjct 556788 GGATACATTCTTTTAGTAGAGCACTCTAATGCTAATTGTTTTATATCATAATTCGGATCT 556729 Query 42721 TCAGGTTTTAAATTAATTCCTTCTTCAATAAAGAAGACTAATTTTGGAAATATTGCTGTG 42780 | | | ||||| | |||| || ||| | || || | |||||| || || || || Sbjct 556728 TTCGAACTAAAATTCACGCCTTTTTTAATTGAAAACACAAGTTTTGGGAAGATGGCAGTA 556669 Query 42781 ACTCCATCTTTGCCTAATCCTTTAATTCTATTTTTTAAAATAGCTTCTTGAATAACAGTG 42840 | | |||||| || || ||||| |||||| | || | ||| |||| ||| || | | Sbjct 556668 ATACGATCTTTACCCAAACCTTTGATTCTAGTGTTAAGAATTGCTTGTTGGATTTTACGG 556609 Query 42841 C-CCATCCATGTGGTTGAAGTACCAAAACTAATTGTTACAAAAGGAGTTTGCCCATTAGA 42899 | || || || | | | ||||| | | |||||||||||| ||||| ||||| || Sbjct 556608 CTATATGTATCTGTTCCTAAT-CCAAATCCTAATGTTACAAAAGGTGTTTGACCATTTGA 556550 Query 42900 ACTAAAAAGTGTATTAATTTCGTATTC 42926 || | | ||| |||||||| ||||| Sbjct 556549 TGTATACAATGTGTTAATTTCATATTC 556523 Score = 93.3 bits (102), Expect = 4e-14 Identities = 243/361 (67%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 41683 GGATTACCAAGATATCCGCAAGTTCGACGAACAACAGACATCTTTT-TAGTGTC--CATT 41739 |||||||||||||| || || || || || ||| || || | ||| || |||| Sbjct 557754 GGATTACCAAGATACCCACATGTACGTTTTACTACAT-CAACTGTAGTAGGATCATCATT 557696 Query 41740 TCACCACATTTAGGGCATTTAAACCCATTCTCTGTAGGAATAAATTCTCCATGGAAATCA 41799 |||||| | ||| |||| | | || | ||||| |||| || || | || ||| Sbjct 557695 --ACCACACTCAGGACATTGATAGCCTGTTGTTGTAGTTTTAAAATCACCTTTAAAGTCA 557638 Query 41800 CATGTAAAGCATTGGTCAACAGGTGTATTTGTTCCAAAATAATCAAGATTTTCTACAGCA 41859 ||| || || |||| || | || || || |||||| | || || | | Sbjct 557637 CATTCCCTACAATGATCAATCGGAATGTTCGTGCCTAAATAACTTACCTTATCATATGAA 557578 Query 41860 TAATCCCAAACTTGTTCTAATGCTTTTAAATTATCTTTCATATTAGGAAGTTCTACA-TA 41918 |||||||| || |||||| ||||||||||||| || | || ||| ||| ||| || Sbjct 557577 TAATCCCATACCGCTTCTAAGGCTTTTAAATTATGATTTAATTTCGGATATTC-ACAGTA 557519 Query 41919 AGAAATATGACCACCAGTGGCAATACGATGATAATCCTTTTCAAAATCAATTTTTTCAAA 41978 | || | ||||||| | ||| | | ||||||||||||||||||||||||| ||||| Sbjct 557518 ATGGATGTAACCACCACTTGCATAAAAAGGATAATCCTTTTCAAAATCAATTTTCTCAAA 557459 Query 41979 CGGGTTAACTTTACGTTCT-ACATCAAGGTGAAAACTATTTGTATACCAACCTTTATCTG 42037 || ||| | | |||| |||||| ||| || |||| ||| | ||||| || | Sbjct 557458 TGGTGTAA-TATCTTTTCTCACATCATAGTGGAATGAATTTTGATAATATCCTTTGTCAG 557400 Query 42038 T 42038 | Sbjct 557399 T 557399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518227717900080