Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_028821.1 Length=40670 Score E Sequences producing significant alignments: (Bits) Value seq89 289 7e-74 >seq89 Length=3091062 Score = 289 bits (320), Expect = 7e-74 Identities = 258/323 (80%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 28135 TTTTTAGGTTCAAGAAATTGAACGCTATCTGCAACTACTTCAGTCACAAATATTCGACGA 28194 |||||||||||||| |||||||||||||| |||||||||||| ||||| | ||||| Sbjct 140312 TTTTTAGGTTCAAGGAATTGAACGCTATCACAAACTACTTCAGTTACAAAAACACGACGT 140371 Query 28195 CCTTCTTGATTTTCATAACTGCATGATTGAATTCGACCATCAACGCCTGCTAATTTTCCT 28254 |||||||| |||||||| || | ||||||||| ||||| |||||||| ||||| | ||| Sbjct 140372 CCTTCTTGGTTTTCATAGCTACGTGATTGAATGCGACCGTCAACGCCCGCTAAACTACCT 140431 Query 28255 TTCGATAAATAGTTGTTAACATTGTGTGCTTGTTTTCTAAATACGATAATATTGATAAAA 28314 || | || ||||| || ||||| | ||||||||||||||| |||| | ||| || ||| Sbjct 140432 TTGAACAAGTAGTTATTTACATTATCTGCTTGTTTTCTAAAAACGACACAATTAATGAAA 140491 Query 28315 TCTGCTTCACGTTCACCCTGTGCGTTTGTGAAATTACGATTAACTGCTAGTGTGAAAGTT 28374 |||||||| ||||| || || || ||||| || |||| || |||||||| || ||||| Sbjct 140492 TCTGCTTCGCGTTCCCCTTGCGCATTTGTAAACGTACGGTTTACTGCTAGAGTAAAAGTC 140551 Query 28375 GCAACATCAATTCCACTTTGAGTTGTTCTAAATTCAGGATCTTTAGTTAAACGACCTACT 28434 |||||| | || | ||||||||| |||| |||||||| ||||||||||| ||| Sbjct 140552 GCAACACTCACGCCTGAGGGTGTTGTTCTATATTCTGGATCTTTCGTTAAACGACCGACT 140611 Query 28435 AATACGACTCTGTTAATCATTTA 28457 || || ||||| || |||||||| Sbjct 140612 AAAACAACTCTATTTATCATTTA 140634 Score = 196 bits (216), Expect = 1e-45 Identities = 676/1050 (64%), Gaps = 30/1050 (3%) Strand=Plus/Plus Query 37091 AAAGTTTCTTTTGTTGCAGTTGGAGATAATTTAATTCATCCAGTTGTTTATAACGATGCA 37150 |||| |||||| |||||| || ||||||||||| ||||||||||| ||| || ||| Sbjct 662283 AAAGCATCTTTTTATGCAGTAGGTGATAATTTAATACATCCAGTTGTATATCGTGACGCA 662342 Query 37151 AAAACTCATCACAATGACTAT---GATTTTTCATCAATGTATAAAAACGTTAAACCTTAT 37207 | || |||| | | |||||| | | ||||| || | || | Sbjct 662343 TTA---CAAAGGAATGGTTCTTTCGATTTTGAACCTATGTACGAATCACTAAAGAAAGAA 662399 Query 37208 ATAAAAAGATTTGATATTGCTTACATCAACCAAGAATCACCAATGGGAGGGGATGATATA 37267 ||| || | |||||| | || | || || ||||| || || || || ||||| | Sbjct 662400 ATACAAGCAGCAGATATTTCCTATGTAAATCAGGAATCGCCGATTGGTGGAGATGAAAAG 662459 Query 37268 CCTTATTCAGGTTTTAAAAGGTTTAATACTCCTAGCGATTTGTCGAAATATTTGGTTGAA 37327 ||| || |||||| ||| ||||| |||| ||| | | | || | || || Sbjct 662460 GGACTTTCTGGATTTAAACAGTTCAATACGCCTAATGATATTGCTAGGGATGTTGTGGAT 662519 Query 37328 TCAGGATTTAATTTAATTAACGGATCAAATAATCATGCTCTCGATAAAGGTACACATGGC 37387 | || |||||| || | || || | || ||||||||| | ||| ||||||| |||| Sbjct 662520 ACTGGTTTTAATGTAGTGAATGGTGCTAACAATCATGCTTTGGATCAAGGTACTGATGGA 662579 Query 37388 GTTAATCATAGAG-TTAATCTATGGGAAAAGTATAAAGAAAAAGGAGTTATGTTCACTGG 37446 ||| | | || ||||| | |||||| | | ||||| | ||| | | || || Sbjct 662580 -TTATTAAATGAAATTAATGTGTGGGAACATTTTAAAG------GTGTTTTTTATACAGG 662632 Query 37447 TGTATACAAGTCTAAAAAAGATAATGAGAAACTTCAAATTATAAATAAAAATGGAATAAA 37506 || || || ||| ||| | || | | | | || | |||||||| || || || Sbjct 662633 GACATTTAAATCACAAAGAGACAGGGATACAATCCCAACGTTTAATAAAAAAGGGATTAA 662692 Query 37507 GATAGCAATACTTAATTATACATTTGGTACTAATGGACTTAAACCAGAAAATAAATATCA 37566 || ||||| || | |||||||| ||||| || | ||||||| |||||||||||||| Sbjct 662693 AATTGCAATGCTAAGTTATACATACGGTACGAACGATATTAAACCGGAAAATAAATATCA 662752 Query 37567 AATTAATTATTTGAATGAAAATAAAATAAAGCGAGACGTCAAATACGCTAAAAAATATAG 37626 ||| || || || ||||| | |||| || ||| || | | |||||| || | || Sbjct 662753 AATAAACTACTTTAATGAGGAACAAATCAAAAAAGATGTAGCAAAAGCTAAAGAACAAAG 662812 Query 37627 TGATGCTGTCATCGTTTCAACTCATTGGGGACAAGAAAGTCATCATTATCCAAATAAAAA 37686 |||| || || || || | |||||||| | ||| | | || | || ||| ||| Sbjct 662813 TGATATGGTTATGGTATCGGCACATTGGGGTAATGAAGGCAAACACGAGCCTAATGCAAA 662872 Query 37687 ACAAGAAAGATATGCTAAAATATTCGCAAATTCGAATGTCGATGCAGTAATAGGTATGCA 37746 ||| || ||| || || |||| || || | ||||||| ||||||||| | || Sbjct 662873 ACAGAAACAATACGCCAAGGTATTTGCTGATGCAGGCGTCGATGTAGTAATAGGAACACA 662932 Query 37747 TCCTCATGTAATCCAACCGGTAAAATGGGTAAAAGGTAAAAATAATCACAAAACACTGGT 37806 |||||| || || || || | ||||||| || || || ||||||| |||| |||| Sbjct 662933 TCCTCACGTGATTCAGCCAATCCAATGGGTGAAGGGCAATGATAATCATCGAACATTGGT 662992 Query 37807 AATTTACTCATTAGGTAATTTTTTAAATGGTCANNNNNNNNNNNATGAAAGTAATAATCT 37866 ||| || | |||||||| || ||||| || ||||||||||| || Sbjct 662993 TGCTTATTCCCTGGGTAATTTCTTGAATGGCCAATCTACTGGTAATGAAAGTAATGCGCT 663052 Query 37867 TTGTGGTAGCATAAACTTCGATAT-----AACaaaaaaaGGACAGAAAATTGTGATTAAA 37921 | || | ||| | || |||| ||||| || | || || | |||||| Sbjct 663053 AGGGGGCAACATTCAGTTTAATATTGAAAAACAACCTAAAGGCATAACA-----ATTAAA 663107 Query 37922 AATGTTCATTGGAAATCCTTAGTAAATTACTAT-AAAGAAAGAATACCAGGCAATA--AA 37978 |||| | ||||| || ||||||| | ||| ||| ||||| ||| ||| || Sbjct 663108 GATGTAAAATGGAAGTCATTAGTAACGCATTATGAAATTGAGAAT-CCACTTGATAGTAA 663166 Query 37979 GATTCTAGATATGATTTTACTGTTTACCCACTAGACAAATACAACGACAAAATAGCAAAT 38038 || | || | |||||| | || ||||| | | || | | || | ||| || Sbjct 663167 GA--CAAGGCAAAATTTTAAAATGTATCCACTGGCTGATTATACTAATAATAAAGCTAAG 663224 Query 38039 GAACATGGTATGCAAAGTGGTGAAAACAAGGATATGACTAAAGAACATATGGAAAGAATT 38098 |||| | | || | | || | | || || ||||||||||| | |||||| ||| Sbjct 663225 CAACACGCTTTGAATACGACTGCAGAAAATGAAATGACTAAAGATAAAATGGAATCTATT 663284 Query 38099 ACTAATGAAATTATTGATAAAGAATTTTTA 38128 ||||| || | || ||||| ||| |||| Sbjct 663285 ACTAAAAAAGTCATAGATAATCAATATTTA 663314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130020235289568