Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq157 150 3e-31 seq89 114 2e-20 >seq157 Length=245904 Score = 150 bits (166), Expect = 3e-31 Identities = 246/352 (70%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 125186 ACACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCATAATCCCA 125245 ||||| ||| ||||| ||||| || ||| | || | || | || |||||||| Sbjct 52366 ACACTCATCGATCGGCGTATTGGTGCCGTAATAGGGCACACGGCTATAGCTGTAATCCCA 52425 Query 125246 TACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAACAGATGAA 125305 ||| || || |||||| ||| | | ||| ||||| |||| | || || ||||| Sbjct 52426 GACGTCTTCCAGCGCTTTGAGGTTATGTTGCAGGTTCGGATACTCGCCGTAGCAAATGAA 52485 Query 125306 ACCACCGTTTGCATGAATTGGGTATG-CAGCTTCAAAATCAATTTTCTCAAATGGGTTCA 125364 || |||||||| | |||||| | ||| |||||| || ||||||| | || |||| Sbjct 52486 GCCTCCGTTTGCCAGCGGTGGGTAGGGCAG-TTCAAAGTCGATTTTCTGGTAAGGATTCA 52544 Query 125365 CTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTGATACCTG 125424 | ||||| |||||| | |||||| ||| ||||| || |||| || | | |||| Sbjct 52545 CCTTCTTCTCCACGTCCAGGTGAAAGCTGTTGGTGTAGTAACCTTTATCGGTCACGCCTG 52604 Query 125425 TAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGATTCACTTG 125484 | || ||| ||| | ||||| ||| |||||||| ||||| || |||||| | Sbjct 52605 GTACCACGCCGAATTCAGCGGTGTCGATACGGCAGAAACGGTCACACAGGTTTTCACTCG 52664 Query 125485 GTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCATGCATCGGT 125536 | |||||||| || |||||||||||||| || ||||||||| |||||| Sbjct 52665 GCGTACTGTAAAGGCTGAAACCGTAGCCGGTTTCTTCTTTCCACTGATCGGT 52716 >seq89 Length=3091062 Score = 114 bits (126), Expect = 2e-20 Identities = 219/320 (68%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 125185 TACACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCATAATCCC 125244 |||| ||||||||||| | ||||| || || ||| ||| ||| || | |||||||| Sbjct 557630 TACAATGATCAATCGGAATGTTCGTGCCTAAATAACTTACCTTATCATATGAATAATCCC 557571 Query 125245 ATACGCGCT-CTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAACAGATG 125303 |||| |||| ||| |||| | || | | ||||| | ||| ||| |||| Sbjct 557570 ATAC-CGCTTCTAAGGCTTTTAAATTATGATTTAATTTCGGATATTCACAGTAATGGATG 557512 Query 125304 AAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAATGGGTTC 125363 ||||||| |||||| || || || | |||||||||||||||||||||||| | Sbjct 557511 TAACCACCACTTGCATAAAAAGGATAATCCTTTTCAAAATCAATTTTCTCAAATGGTGTA 557452 Query 125364 ACTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTGATACCT 125423 | | || ||| || |||| || || ||| ||||| |||||||| ||| Sbjct 557451 ATATCTTTTCTCACATCATAGTGGAATGAATTTTGATAATATCCTTTGTCAGTGACGTTC 557392 Query 125424 GTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGATTCACTT 125483 | || |||| ||||| || || || | ||| |||||||| ||| ||||||||| Sbjct 557391 GGTATTTCACCATATTTTTCCATATCAAGTCTACAAAAACGATCGGTTAGAGATTCACTT 557332 Query 125484 GGTGTACTGTACAGACTGAA 125503 ||||| || || | ||||| Sbjct 557331 GGTGTGCTATAAACGCTGAA 557312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793739689468160