Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_028871.1 Length=38392 Score E Sequences producing significant alignments: (Bits) Value seq89 170 5e-38 >seq89 Length=3091062 Score = 170 bits (188), Expect = 5e-38 Identities = 231/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 35496 AATGATGAACCGTGTAGTGCTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACAC 35555 |||||| || | || || | || || || ||||||||||| || |||| | || Sbjct 140632 AATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAAC 140573 Query 35556 TCCAGCTGGAGTAGCTGTTGCGACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGC 35615 || | || || ||||||||||||||| ||||||||||| || | |||| |||||| Sbjct 140572 ACCCTCAGGCGTGAGTGTTGCGACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGC 140513 Query 35616 ACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAA 35675 ||||| |||| ||||| ||||||||||||||||| |||| | |||| ||| || || Sbjct 140512 GCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTTTTAGAAAACAAGCAGATAA 140453 Query 35676 CGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCG 35735 | | ||| | |||| ||||| || | || |||||||| || || ||||| | || Sbjct 140452 TGTAAATAACTACTTGTTCAAAGGTAGTTTAGCGGGCGTTGACGGTCGCATTCAATCACG 140393 Query 35736 TAATTATGAGGACAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGT 35795 || ||||| || || || || ||||| || ||||| |||||| ||| | || Sbjct 140392 TAGCTATGAAAACCAAGAAGGACGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGT 140333 Query 35796 TCAATTCTTAGAGCCTAAAAAT 35817 ||||||| | || ||||||||| Sbjct 140332 TCAATTCCTTGAACCTAAAAAT 140311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122730756652296