Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq89 426 1e-114 >seq89 Length=3091062 Score = 426 bits (472), Expect = 1e-114 Identities = 1126/1693 (67%), Gaps = 66/1693 (4%) Strand=Plus/Minus Query 37491 CTTACATATGTTTTACACGTGCATCTATTTCTTTCTTACGTCCATGTGCATTAGGACGAG 37550 ||| || |||||| || || ||| |||||||| | | ||| | ||||||| Sbjct 557819 CTTTCAGATGTTTCACTCGAGCACACATTTCTTTATGCCTTCCTTCAATCGTAGGACG-- 557762 Query 37551 CTTG---TGGTTGACCTAAATAACCACATTGTCTTTTAACAACATCACATGTTGCAGGGT 37607 ||| ||| | ||| | ||| |||||| | ||| || |||||| ||| | ||| | Sbjct 557761 -TTGGACTGGATTACCAAGATACCCACATGTACGTTTTACTACATCAACTGTAGTAGGAT 557703 Query 37608 CATTATTACCACATTGCGGGCATTCATAACCATCTGATGTAGGGTTAAACTCTCCATCAA 37667 ||| ||||||||| | || |||| ||| || || ||||| ||||| || || | || Sbjct 557702 CATCATTACCACACTCAGGACATTGATAGCCTGTTGTTGTAGTTTTAAAATCACCTTTAA 557643 Query 37668 AACCGCATTCATGACATTTATCAATTGGGGTGTTTGTTCCAAGATAACCAACTTTATCGT 37727 | | ||||| ||| | |||||| || |||| || || | ||||| || ||||| | Sbjct 557642 AGTCACATTCCCTACAATGATCAATCGGAATGTTCGTGCCTAAATAACTTACCTTATCAT 557583 Query 37728 AGCTGTAGTCCCAAACAGCTTCTAACGCCTTAAGGTTGTGAACTAGTTTAGGGTATTCTA 37787 | || ||||| || |||||||| || || | || ||| || ||| || ||||| | Sbjct 557582 ATGAATAATCCCATACCGCTTCTAAGGCTTTTAAATTATGATTTAATTTCGGATATTC-A 557524 Query 37788 CA-TAATGGATAAAACCACCGGAAGCATATTTTGGAAACTCTTTTTCAAAATCAATCTTT 37846 || |||||||| ||||||| ||||| ||| | || |||||||||||||| || Sbjct 557523 CAGTAATGGATGTAACCACCACTTGCATAAAAAGGATAATCCTTTTCAAAATCAATTTTC 557464 Query 37847 TCAAAAGGTGTTGGAGCTTTGCGAACATCATAGTGGAAGCTATTTGTATAATATTCTTTA 37906 ||||| ||||| | |||| | |||||||||||||| |||| ||||||| |||| Sbjct 557463 TCAAATGGTGTAATATCTTTTCTCACATCATAGTGGAATGAATTTTGATAATATCCTTTG 557404 Query 37907 TCTGTGATATTCTCAATAACTCCGTATTTTTCTGTATCCATGCGACAGAATCTATCAGTT 37966 || |||| ||| || | || |||||||| |||| | | ||| || | ||| ||| Sbjct 557403 TCAGTGACGTTCGGTATTTCACCATATTTTTCCATATCAAGTCTACAAAAACGATCGGTT 557344 Query 37967 AAACTTTCACTTGGTGTTGAGTAGATAGAGAACCAGATTCCTGTTTCTTTTGTCCATTCA 38026 | | |||||||||||| || | |||||| | | || || ||||||| Sbjct 557343 AGAGATTCACTTGGTGTGCTATAAACGCTGAACCAAACATCATATTGTTCAGTCCATT-- 557286 Query 38027 TCCTTT--TTATCATAAA--GCTTACGTAGAACGTCTAAAGCAAACTCTTTTGCCTCTTC 38082 || || | | | | | |||| || | ||||| | ||| | ||| || Sbjct 557285 TCAGTTGGTAAACTTTCATTGCTTT--TAATATATCTAATGTAAATTTTTTAGCT----- 557233 Query 38083 ATGATGTGGGTCTGTTTTATCTTGCCAGTCACCACCATAGAACATGCTAGCAACCTCGTA 38142 || | |||| || | ||| | | |||||| |||| |||| | || || Sbjct 557232 ---ATA---GACTGTGTT----TCCCAATTAGGACCATAAAACACTGTAGCCGCTTCATA 557183 Query 38143 CAGCCCAATATAGCCCATAGAAACCGTTGCACGGTTATTTATGAACAATTGTTTTACATC 38202 || |||||||| |||||||| | || || || || | | |||||| | | ||| Sbjct 557182 CAAACCAATATATCCCATAGATAAAGTAGCTCGTTTTCCTTTTAACAATGTCATAATATC 557123 Query 38203 GTCATCATCGGTTAAATTAGCCCCAAAAGCACCATGTTTGTACAAGATAGGAGCATTCTT 38262 || | ||| |||||| | ||| ||||||| ||| || || ||||| ||||| | Sbjct 557122 TTCTTTATCTGTTAAACGATGTTTAAATGCACCATTTTTATATAAAATAGGCGCATTATC 557063 Query 38263 TGGTTGAGCTTCGTAAGTACGTTCAATTCGATAAACCAAAGCATCATGTAATA---CCTT 38319 ||| ||||| || | |||| ||||||||| || | ||||||||| | || || | Sbjct 557062 AGGTGTTACTTCGGAAATGCGTTGAATTCGATAGACGAGAGCATCATGCATTAGTGCCAT 557003 Query 38320 AGCTCGTTCTTCAAAAATTTCCCAGAAGACTTCTTTATCCCCTTCTGATTCAATAGCAAT 38379 |||||| | || || | ||| || | ||| | || || | |||||||| || || Sbjct 557002 ---TCGTTCATGGAATATCTTCCAAAACATTTCAATGTCACCATTAGATTCAATTGCTAT 556946 Query 38380 ACGTGGTAAGTTAAGGGTTACTACTCCTAAATT-CATACGACCAGAGTTTACTTCGTTTC 38438 | || | || | || || || |||||||| ||| | ||| || | | || Sbjct 556945 TCTAGGCACATTTAATGTCACAACACCTAAATTACAT-CTTCCATTATTCTCAAATTCTC 556887 Query 38439 CATGTTCATCTTTCCATCCTTGTAAGAATGAACGACAACCCATAGGACATTTAAATGAAC 38498 || ||| | ||||| || | || || |||||||||||||| ||| |||||| || Sbjct 556886 CAATTTCGTTCTTCCAAGCTGGCAAAAACGAACGACAACCCATCGGAGCTTTAAAATCAC 556827 Query 38499 CTGTTAGCTCAACAATTTTGTCATAGTTCAAAATATCAGGGTACATACGTTTAGCTGAAC 38558 || || || || |||| ||||| |||||||||||||| ||||| | ||||| || | Sbjct 556826 CTAATATTTCTACCGTTTTATCATAATTCAAAATATCAGGATACATTCTTTTAGTAGAGC 556767 Query 38559 ATTCTAATGCTAACTGTTTTACTTCATAGTTAGGGTCTTCTGGTTTACGGTTAACTCCGT 38618 | ||||||||||| ||||||| ||||| || || |||| | || || || || | Sbjct 556766 ACTCTAATGCTAATTGTTTTATATCATAATTCGGATCTTTCGAACTAAAATTCACGCCTT 556707 Query 38619 CTTTAATAGTGAACAATAATTTAGGGAAGATTGCTGTACGTCCTTCTGTTCCTAGACCTT 38678 |||||| | |||| | ||| |||||||| || ||| | ||| | || | ||||| Sbjct 556706 TTTTAATTGAAAACACAAGTTTTGGGAAGATGGCAGTAATACGATCTTTACCCAAACCTT 556647 Query 38679 GGATACGTACT-TTAAAAATAGCTTTTTGGATTTCTCTTTCCCAACGT-CCAGTACCTAA 38736 ||| | || | |||| ||| |||| |||||||| | | | || | || ||||| Sbjct 556646 TGATTC-TAGTGTTAAGAATTGCTTGTTGGATTT-TACGGCTATATGTATCTGTTCCTAA 556589 Query 38737 ACCAAAACCAATAGACGTGAAAGGGGTCTGACCATTCGATGTAAATAACGTATTGATTTC 38796 ||||| || | | ||||| || |||||||| |||||| | || || || ||||| Sbjct 556588 TCCAAATCCTAATGTTACAAAAGGTGTTTGACCATTTGATGTATACAATGTGTTAATTTC 556529 Query 38797 ATACTCTAGGCTTTGCATTGCATCGTAAATATCTTTGTTTGTTTTCTCGAT----TGCAT 38852 ||| |||| |||| || ||||| | ||||| |||| |||||| ||| Sbjct 556528 ATATTCTAAACTTTCTATAGCATCTTCGATATC-TTGT---GAAACTCGATAATCAACAT 556473 Query 38853 ATGTTTCTGGTTCGGGAATACGGTAAC--GTTTAGCATCCGCCATATGTTTTTGATAA-- 38908 | |||||| || | | || || ||| || |||| | | || | | Sbjct 556472 AAGTTTCTATGTCTTG--TGGTGTCACAAATTT---TTCAGCCAATTCTCGATGCTTAGC 556418 Query 38909 TTCAT----TTCGGCATAAGGTGCT-AATACTTCATCAATGCGGTCAAATGAACAACCCC 38963 ||||| || | ||| | ||| | || |||||||| ||||||| || ||| || | Sbjct 556417 TTCATTATATTGAACGTAATG-GCTCAGTAATTCATCAACTCGGTCAATTGTACACCCTC 556359 Query 38964 CATACTGACTGGAAGCCACATTCGCAATAATTTGTGCTGTTTGTGCTGTAGCTGTTTGAA 39023 |||| || || || ||||| ||||| |||||| | ||| || | ||||||||||| Sbjct 556358 CATATTGGCTACTAGAAACATTGGCAATGATTTGTACAAGTTGGGCAGAAGCTGTTTGAA 556299 Query 39024 TGGAATGAGGTGAACCGATTTCTGCATTACCCATTTTAAACCCGTTCTTCAACATATATT 39083 | || | ||||||| | ||| ||||| |||| ||| || ||||| | |||| || Sbjct 556298 TTGATTTAGGTGAAGTCACAGTTGCGTTACCAATTTGAAAACCATTCTTGAGCATACTTT 556239 Query 39084 CAAAGTCAATCAAACAACAATTTGTCATTGGACGATAAGGTTGGTAGTCTAAATCGTGAT 39143 | || || || |||||||| || | || || | || || || |||||||| ||| Sbjct 556238 CTGCATCTATTAAGCAACAATTCGTAAGCGGTTGAAATGGATGATAATCTAAATCATGAA 556179 Query 39144 AATGAATATCTCC 39156 |||| || ||||| Sbjct 556178 AATGTATGTCTCC 556166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472148525452080