Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq157 163 3e-35 >seq157 Length=245904 Score = 163 bits (180), Expect = 3e-35 Identities = 573/881 (65%), Gaps = 38/881 (4%) Strand=Plus/Plus Query 141621 GATATCTGGGTACATACGTTTCGAAGCGCATTCCAGAGCCAATTGTTTGATGTCATAGTT 141680 |||||| |||||||| || || | ||| ||||| |||| ||| |||||||||||||| Sbjct 53204 GATATCCGGGTACATCCGCTTGCTGGAGCAATCCAGTGCCAGTTGCTTGATGTCATAGTT 53263 Query 141681 ACGATCCCCAGGATTCATGTTTACACCTTTTTCCATAAACATGACCAGTTTAGGGAACAC 141740 |||| ||| || || ||||| | ||| | |||||||| |||||||| Sbjct 53264 CGGATCGGCAGCCTTGTGATTGACACCGTCGCGGATAGCGAACACCAGTTTGGGGAACAC 53323 Query 141741 AGGGGTAATACCTTGTTTACCCAGACCACGAATACGGTTTTTCAGAATCGCTTTCTGGAT 141800 | || ||| | ||| |||||||| ||||||||| ||| || | || |||||| Sbjct 53324 CGCAGTTTTACGGTTTTTGCCCAGACCGGCAATACGGTTGCGCAGGATGGATTGCTGGAT 53383 Query 141801 CATTCGTTCAAACATTCCC-----GTACCAGTACCGAAAGTAATAGTAACGAAAGGTGTT 141855 || || |||||| || || ||||| || || ||||| || || Sbjct 53384 CAGACGCG-----ATTCCCAACTGGTGCCGAGGTCGAAACCAAAGGTGACGAACGGCGTC 53438 Query 141856 TGTCCGTTGGCAGTATGCAGCGTGTTAACTTCGTATTCATACGATTGGAAAGCATCAAA- 141914 || || |||||||| |||||||| || ||||| ||||| ||| ||||| || || | Sbjct 53439 TGACCATTGGCAGTGTGCAGCGTATTTACTTCATATTCCAGCGACTGGAAGGCGTCGTAG 53498 Query 141915 CACATCTTTTTCAGTCTTTTCCATCGCATATGTACGATC-CAACGA-AATTTTATACTTT 141972 ||| | | || || |||||| | || | || || ||| | ||| Sbjct 53499 CAC-----TCTAGGTACGAGACAGCGCATAGG--CGTCCGCATCGGGAATGTGCCACTCA 53551 Query 141973 TTAGCATCCTTAACATGCTTTTCATATGTC-ATTTCTG-CATACGGAGCCAGCACTTTAT 142030 | ||| | ||||||| |||| | | || | |||| ||||| | || || Sbjct 53552 TCAGCGGTTTCCCGGTGCTTTT--TATGGCTAGCGGTGACGAACGGTGCCAGAATTTCAT 53609 Query 142031 CAA--CGTTTGCAAAGGTTGTCCCGCCGTACTGGTGAGAAGCAATCTGTGCGGTGATCTG 142088 | | || || || ||| || |||||||| ||| || | ||| ||| |||| || Sbjct 53610 CGATACGGTT--AATGGTGGTGCCGCCGTAGATGTGGCTTGCCACCTGCGCGATGATTTG 53667 Query 142089 TGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGGTTCGATGTCTGCGTTACCCAT 142148 ||| | | || ||||| ||| ||||| || || || || |||||||||||||| Sbjct 53668 GGCCGTCACTGCCGTCGCGGTTGAGATGGATTTTGGCGGCTCAATCTCTGCGTTACCCAT 53727 Query 142149 CTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAGACAGCAGTTTGTGTATGGCGT 142208 |||||| || || | || ||| |||| | || | || ||||| | || | | Sbjct 53728 CTTGAACCCTTTGGTCAACATGCCTTCAAGGTCGATAAGCATACAGTT-GAACATCGGGA 53786 Query 142209 -GAACGGGCTGTAATCCAGATCATGATAGTGGATGTCGCCGGAGTCATGCGCTTCTACGA 142267 ||||||| ||| |||||||| || ||||| || || ||| ||||| || || | Sbjct 53787 AGAACGGGGAGTAGTCCAGATCGTGGTAGTGAATTTCACCGCGTTCATGGGCAATCACCA 53846 Query 142268 TATGTTTCGGAAGGATATGATTACGGGCGAAATGCTTCGCTACAATACCCGCCAGCAAAT 142327 | ||| |||||||| | ||| | ||||| || || ||||| ||||||| | Sbjct 53847 CGTCGCGCGGCAGGATATGTTGCTTGGCATAGTGCTTGGCAACGATACCGGCCAGCAGGT 53906 Query 142328 CGCGCTGTGTCGGGAATACCCTTGCGTCTTTGTTCGCGTTCTCGTTGGTGATCTCTTTGT 142387 ||||||| || |||| || | ||||||||| |||||||||||| | | ||| Sbjct 53907 CGCGCTGGGTAGGGATCACTTTACTGTCTTTGTTGGCGTTCTCGTTGAGCAGAGCCATGT 53966 Query 142388 TGGACAGATTCACCATACCGGAGATATC----TTTGAACAGCTTACTTTTCTGTTCACGG 142443 || | | | |||| |||| || || || ||| || | ||||| ||| Sbjct 53967 TGCTCTGTTCAACCAGACCGCGAATTTCCTGATTCAAACGGCAGCGT----TGTTCGCGG 54022 Query 142444 GCAATATCGCGATCGTGACGATATTCGATGTATGCACGGGC 142484 || | ||| ||||||||||| || || ||||| | ||| || Sbjct 54023 GCGACATCACGATCGTGACGGTACTCAATGTAGGTACGCGC 54063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568463637500160