Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq89 298 5e-76 >seq89 Length=3091062 Score = 298 bits (330), Expect = 5e-76 Identities = 542/789 (69%), Gaps = 8/789 (1%) Strand=Plus/Minus Query 48700 CCTTTTAATACTTGAATAGCCTCTTTGACTTCATTTGCATTTCCCACTTCATATCCTAAT 48759 |||| ||| || ||| || ||||||||||| |||||||| | ||| ||||| Sbjct 1240188 CCTTGTAAAGTTTCAATTGCTTCTTTGACTTCCAGAGCATTTCCTATGGCATTGCCTAAC 1240129 Query 48760 GGCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGATTCAGATTTTTTCCAATATCA 48819 || || ||||||| | ||| | || || || |||| | | ||| || |||||| | Sbjct 1240128 GGTTGGCTCATATCAGAAATAATAGCCATCGTATTTCTACCTACATTGTTACCAATACTA 1240069 Query 48820 ACCATTTCTTGTGCTAATGCTTTAGAGTCTTCTAATGTTTTCATAAATGCTCCATTTCCT 48879 |||||| | || || || |||| || ||||| | ||| |||||||| || ||||| ||| Sbjct 1240068 ACCATTGCATGCGCCAACGCTTCAGCTTCTTCGATTGTCTTCATAAACGCACCATTACCT 1240009 Query 48880 GTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATAATGCTA 48939 ||||| |||||||| ||||| || ||||| || || |||||||||||||| || Sbjct 1240008 GTTTTCACATCTAAAACAATGGCGTCTGCACCTGCAGCAATTTTTTTACTCATGATTGAT 1239949 Query 48940 CTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATATAATTTT 48999 ||||||||||||||| ||||| || || || ||||| || || | ||||||||||| Sbjct 1239948 GAAGCAATTAATGGAATCGAATTTACAGTCCCCGTAACGTCACGAAGGCCATATAATTTT 1239889 Query 49000 TTGTCGGCAGGCACTAAAATT-CCACTTTGTCCAACTAATGCGATTTTATGTGTATTAAC 49058 || || || || ||| || || |||| || | | ||||| ||| | || || Sbjct 1239888 TTATCTGCTGG-TGTAAGGTTGCCTGTTTGACCTATCACTGCGACTTTCGCTTCGTTGAC 1239830 Query 49059 TTGATTAATAAATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTCTAATTT 49118 | |||| ||||| ||| | | ||| || | || ||| || |||||||||||| Sbjct 1239829 TAATTTAACAAATTTATCTTCACTGATTTCCACATGGAAACCTGCTACAGATTCTAATTT 1239770 Query 49119 GTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGGAATACC 49178 ||||| ||||| || || || |||| ||| | || |||||| || ||||| | ||| Sbjct 1239769 ATCAATCGTTCCACCAGTATGTCCTAGACCACGGCCACTCATTTTGGCTACAGGTACACC 1239710 Query 49179 CAAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACCTGTGGA 49238 | || || || || || || | | || || || |||| || || ||||| || || Sbjct 1239709 TACTGATGCTACTAAAGGTGCTAATACTAGTGTAGTTGTATCACCCACGCCACCAGTTGA 1239650 Query 49239 ATGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCAGAATTAAT 49298 ||| |||||||| || | || || || || |||| ||| || ||||||||||| | Sbjct 1239649 ATGCTTATCTACCTTAATCCCATCAATATTAGATAAGTCTATGACATCACCAGAATTCAC 1239590 Query 49299 CATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCCATTGAAATAAATTGCCAT 49358 ||| || | |||| || | ||| || | | |||| | | ||||| || ||||| Sbjct 1239589 CATAGCCATTGTTAGTGCTGCACGTTCATCATCATTCATGTCTTGAAAATATATCGCCAT 1239530 Query 49359 ---TAACATAGAAGCCATTTGATAATCAGGAATGTCGCCGTTCGTGTAACCGCGGATGAT 49415 ||| | || || ||||||||| ||||| | || || || || | || | Sbjct 1239529 AGCTAAACTTGATGC---TTGATAATCCGGAATATTACCATTGGTATATTCCTCAATAAA 1239473 Query 49416 AAAATCAATTTCTTCTTTTGAAAGCTCATAACCATCCCGTTTTTTCGCAATTAAATCGAC 49475 | ||||| |||| ||| | | | | ||||| |||||||| |||| | ||| || Sbjct 1239472 GTACTCAATCTCTTGTTTAGTCAATACTTGTCCATCACGTTTTTTTTCAATAATATCTAC 1239413 Query 49476 CATTCTCAT 49484 ||||||||| Sbjct 1239412 CATTCTCAT 1239404 Score = 125 bits (138), Expect = 6e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 5932 AATGGTGATAAAGTTAAATTGTTCGGATTCGGTAATTTTGAAGTTCGTGAGCGTGCAGCT 5991 || ||||| ||||| |||| | ||||||||||| || ||||| || || || || ||| Sbjct 1967838 AAAGGTGAAAAAGTACAATTAATTGGATTCGGTAACTTCGAAGTACGCGAACGCGCTGCT 1967897 Query 5992 CGTAAAGGTCGGAATCCTCAAACTGGAGAAGAAATTGAAATTCCAGCAACTAAATCCCCT 6051 |||||||| || || ||||||||||| |||||||||| || || |||| ||| || Sbjct 1967898 CGTAAAGGCCGTAACCCTCAAACTGGTAAAGAAATTGATATCCCTGCAAGCAAAGTTCCA 1967957 Query 6052 GCTTTCAAACCTGCAAAAGCGTTAAAAGATGCGGTTAAATAA 6093 || || ||| ||| ||||| |||||||| || || |||||| Sbjct 1967958 GCATTTAAAGCTGGTAAAGCTTTAAAAGACGCAGTAAAATAA 1967999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452017678251360