Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq105 161 1e-34 seq13 131 2e-25 >seq105 Length=1502237 Score = 161 bits (178), Expect = 1e-34 Identities = 306/450 (68%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 77705 TACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGT 77764 |||||||| || | ||||| || ||| || ||||| ||||| |||||||| || || Sbjct 285642 TACCTCATCTGCAGATGTATATTCTACTATTTCTGTACAAAGATTGCTACATTTAATGGT 285583 Query 77765 GCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGT 77824 ||||| ||| ||||||||| ||| | ||||| | || || || || || | ||| Sbjct 285582 GCCCAAATTCTGTTGGTTGGATTTTCTGTTGCACGCATCTTTGTACAGCATGTAAGGAAC 285523 Query 77825 CCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT----TTATCA 77880 |||||||| | ||| || || || |||| ||||| | | ||| || | || || Sbjct 285522 ACCGGTTTCCACCTGAGACTCAATTATAGCATTCCACAAGTTTCTTGCGTCAATTTGTCG 285463 Query 77881 TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCC 77940 || || | || | || ||||||||| ||| || ||||| | | |||| Sbjct 285462 TATAT----AACGACCTTCGTTTTCATATTTTACATACAGATCCTCAAAGTTTTTACCCC 285407 Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000 | || |||| | ||||| |||| || |||||||| | ||| | || | Sbjct 285406 AGACGTCATGAAGACCAGGACATTTATGCGGGCACATAAGACTCCATTTCTTATTAGATT 285347 Query 78001 TAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 ||| | || ||| || | |||||| ||||| || ||| ||| ||||| |||| | Sbjct 285346 CAACCCTTTCCATGAACAAATCAGGAATCCAAAGTGCATAAAAAAGATCACGGGCCCGTA 285287 Query 78061 GTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| ||||| ||||| ||||| | |||||||||||| | |||||||| |||||| | Sbjct 285286 CCTCTTCCTTTCCAGTATTTTTTTTCAAATCGAGAAACTCAAAAATATCAGCATGCCAAG 285227 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || || ||||| | | | || |||| Sbjct 285226 GCTCGAGGTAAATTGCAAAAGCACCTGGTC 285197 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||||||||| | ||||| | |||||||| ||| |||| || ||||| | |||| Sbjct 287923 TGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAAAGAT 287864 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || || | ||| ||||| ||||| || || ||||| || || | ||| | | Sbjct 287863 TCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAGGGAA 287804 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || || | |||||| || ||||| ||||| ||| ||||| ||||| ||||| || Sbjct 287803 TTCCTAACACCATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGATCAGAT 287744 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || || |||| | ||||||||| | ||| Sbjct 287743 GGAGTCACTCCCCACATATCGTATTGCAAAAT 287712 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||| | || ||||| | ||| || || ||||| || || || |||||||||||||||| Sbjct 284751 GTTGCAGCGTTAAAAAGTGTGGGGGAGGCATGTGTGAAATATCCTTCAGAAAGTAGATTG 284692 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| | ||||||||| | ||| || | ||||||| Sbjct 284691 TAAGTTTCAATTGCAGCGTCAATGTCTTCTCCATGAATTCCAATCGCGACTCTCATCAAC 284632 Query 78519 ATATGCTGAGGTCTTTCAAC 78538 |||||||||||||| || || Sbjct 284631 ATATGCTGAGGTCTCTCGAC 284612 Score = 109 bits (120), Expect = 8e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||||| || |||||||| | ||||| || || |||||| ||||||| |||||||| | | Sbjct 285099 TTATTGCCACCCTGATCCACATATCGAGCAGTATTATTAAAAACTCTTAACATTGGCACA 285040 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 | |||||||| | ||||||||||||| ||| |||| || |||| |||||| | Sbjct 285039 AGTCCGTTAGAGATGCCATTTGTTCCAGCAATTAAACTGCCTTTTGCCCGAATACAATGT 284980 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 | | || || || || || || | || || || | || | |||| |||||||| Sbjct 284979 ACGTGAATTCCAATACCACCAGCAGTTTTTGAAATCAACGCAGACTGTTTTAATGTATCA 284920 Query 78333 TAGATACCCTCTATACTGTCATC 78355 ||||||| || || || ||||| Sbjct 284919 AAGATACCTTCGATGCTATCATC 284897 Score = 105 bits (116), Expect = 9e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 77339 TCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC 77398 ||| || ||| || ||| |||| |||||| || || ||||| | | ||||| || || Sbjct 286276 TCCTTTGCTAACAGGTGAACCATCATATGTCTCGTACGGTCCAAGTTTCTCAGCAAGATC 286217 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 |||||| ||||| | || || ||||||||||| ||||| |||| || || | ||| Sbjct 286216 ACAACTTGCTTCAAGCGCGCCATAATAAATTGTCTCGAATATCTGTTTGTTCAATGTTTG 286157 Query 77459 TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 || | ||| || || ||||| || | | || || | ||| ||||| || ||||| Sbjct 286156 GGCCTGAATGCTCTCGAACGGGTACCTCATCAATATGAAAGTATCGGCTAAACCTTGAAC 286097 Query 77519 TCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 ||||| |||||||| | ||| ||| | || || Sbjct 286096 ACCAATTCCAATAGGACGATGCCTCATGTTCGA 286064 >seq13 Length=9188118 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 48410 GTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 ||||||||| |||| ||| |||||||||||| || |||||||| ||||| |||||||| Sbjct 3474721 GTAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATATTTTCTATTGCGATCTGAAA 3474780 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 ||||| ||||| |||||||| || | || || || | |||| ||||| | | ||| Sbjct 3474781 ACCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAGAAAACCGTTCGACAAGATT 3474840 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATG 48574 |||||||| || || || ||||| ||||||||||| ||||| Sbjct 3474841 TTCATTTACAATCCCGTCCGATGCAGCGAAAAATGCTAAAACATG 3474885 Score = 109 bits (120), Expect = 8e-19 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 |||||||||||||| || |||||||| |||||| | ||||| |||||||| || | Sbjct 3474136 AGTCTATCTGCAACAAACTCTATATACTGTTTCATGAGATCACAGTTCATTCCGATCATA 3474195 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATC---CACTATT 48086 |||||| || || || ||||| |||||||| ||||| || ||||| || ||| || Sbjct 3474196 GCAACTGGGAGTGCTTCGGTAAGGAACTCTTGCTCGATGGTAACAGCGTCAGCCACGATG 3474255 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 ||| || | | | ||| ||| | | ||||||||| ||||| | || ||| Sbjct 3474256 GACGAGATTCTAGCTACGTCA---GGTTTCTGTACCAAATGTTTGAACATGAGGCACGCA 3474312 Query 48147 AAATCACAATGAAGACC 48163 ||||||||||| ||||| Sbjct 3474313 AAATCACAATGGAGACC 3474329 Score = 89.7 bits (98), Expect = 7e-13 Identities = 155/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||| |||||||| || || || || || | || ||||||||||| Sbjct 3474384 TCATCTCTGGAAATCAATTCGTTGCTGAAAGTCAGCCCAGGTAGAAGGCCACGTTTTTTC 3474443 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| ||||| || |||||| || || || || || || || ||||| ||||| || Sbjct 3474444 ATCCAGAATATCGCGGCGAAACTGCCGGAGAAAAAGATTCCCTCGACGGCGGCAAAAGCC 3474503 Query 48285 GTAAGTCTCTCTCCGTAACTGGCT---TCG-TTGTGTATCCACCGTTGTGCCCAATCAGC 48340 | || ||| ||| | | ||| ||| ||| | ||||| |||||| || || Sbjct 3474504 ACGACTCGCTCGCCGAAGGTCGCTTTATCGCTTGAG-ATCCATGACAATGCCCATTCTGC 3474562 Query 48341 CTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 ||||||||| ||||| ||| ||||| || ||||| || || Sbjct 3474563 CTTCTTCTTAACACACTCCATGGTTTCGATTGCATTGAACAG 3474604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694656625929280