Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq46 89.7 5e-13 seq69 87.8 2e-12 >seq46 Length=4728336 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || || || || || ||| || || || ||||| ||||| || || || || | || Sbjct 1570240 AAAACAAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGCGTACGACCATCC 1570181 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 ||||||||||| |||||||| |||| | ||| ||||| | ||||| | ||||||| | Sbjct 1570180 TCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGT-C 1570122 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || |||| |||| || | | | ||||| | ||| || |||| || || || Sbjct 1570121 TTGGATTTTAGCTTTGACATTGTCAATGGTGTCCGATGGCTCAACTTCCAAAGTGATTGT 1570062 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| |||||||| || Sbjct 1570061 CTTTCCAGTAAGAGTCTTCACGAAGATCTGCATTTT 1570026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| || ||||| ||||||||||| || ||||| || ||| | || ||| Sbjct 1481075 ACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGAGAGCGTACGCCCATCCTCG 1481134 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || || || ||||| || ||||| | ||| ||||| | ||||| || || |||| | || Sbjct 1481135 AGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGT-CTTG 1481193 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 |||| |||| || | | |||||| | ||| || || | ||||| || || Sbjct 1481194 TATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGACTTCTAAAGTTATGGTCTT 1481253 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| ||||| Sbjct 1481254 TCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| ||||| || ||||| ||||||||||| || ||||| || | Sbjct 1481750 AGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGAATGTTATAATCCGAGAGAGTTCTA 1481809 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTC 41763 | || || || |||||||| ||||| ||||| | |||||||| |||||| || || Sbjct 1481810 CCATCCTCAAGTTGCTTGCCAGCGAAAATCAGCCTTTGTTGGTCTGGCGGGATACCT-TC 1481868 Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| |||||| ||||| | | || || | ||| || |||| || Sbjct 1481869 TTTGTCCTGGATTTTGGCCTTCACATTCTCAATTGTATCTGAAGGCTCAACTTCCAATGT 1481928 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || |||| || || || || |||||||| Sbjct 1481929 GATGGTTTTTCCGGTCAAAGTTTTCACAAAGATCTGCAT 1481967 >seq69 Length=2547145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||| || || || | |||| ||||||||||| |||||||| ||| Sbjct 1551506 TTCTGGATGTTGTAGTCCGAAAGAGTCCTGCCGTCTTCGAGCTGCTTCCCGGCGAAAATC 1551565 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 | | ||||||||||| || | | |||||| | | || | || |||| || | Sbjct 1551566 AACCTCTGTTGGTCCGGTGGGATACCCTCCTTAT-CTTGGATCTTGGCTTTGACATTTTC 1551624 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | ||||| | ||| ||||| | || || || || ||||| || ||||| || || Sbjct 1551625 AATTGTGTCAGACTGCTCGACCTCAAGGGTGATTGTCTTGCCCGTTAGGGTCTTCACAAA 1551684 Query 41854 AATCTGCATGTT 41865 ||||||||| || Sbjct 1551685 AATCTGCATCTT 1551696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462295898122400