Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq172366 621 4e-173 >seq172366 Length=6938 Score = 621 bits (688), Expect = 4e-173 Identities = 1255/1844 (68%), Gaps = 36/1844 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 52887 || || || ||||| | ||| |||||||| ||||| ||||| || || ||| | || || Sbjct 5154 GCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATAGAA 5096 Query 52888 ATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 52947 ||| || || || || ||| | || ||||| | || || || | || ||||| Sbjct 5095 ATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTGACT 5036 Query 52948 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 53007 |||||| ||||| ||||| || || ||||||||||| || | | || || |||||| Sbjct 5035 TTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAATTGTTGATTTAACTGAAATTTC 4976 Query 53008 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATAG 53063 ||||| || || || || || | ||| || |||| |||| ||| | || |||| Sbjct 4975 CCAAACTGTCTTGTATAAGTCTCG-AATGGGTTTAGGAATAGTTTCTATGTTTTGTATAG 4917 Query 53064 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 53123 | |||| | | ||||| |||||| || | |||| |||||||| ||||| | Sbjct 4916 AACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCGGTAA 4857 Query 53124 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183 | |||| || || || ||||||| ||||||||||| ||||| || || | || |||| Sbjct 4856 GATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGT 4797 Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243 | |||||| |||||||||||| | || ||||||||||| | ||||||||| || |||| Sbjct 4796 ATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATG 4737 Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA--TTTTATC 53301 | || |||||||| || || | |||| ||| | | ||| ||||| || |||| || Sbjct 4736 CTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACC--ATGTTTGGAAATTTTCTC 4679 Query 53302 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361 || | || | ||||| ||| | || | ||| ||| ||| | Sbjct 4678 CTTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAA 4619 Query 53362 AATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 53420 | ||||| || | | || ||| |||||| || || || ||| | | || |||| Sbjct 4618 TACCCCGTTGCTTACAGGACTC-CCTTCATATGATTCATAAGGCCCTAACATTTCCGCTA 4560 Query 53421 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 53480 ||| || || ||||||||||| || || || || ||||| || || | |||||| Sbjct 4559 ATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATA 4500 Query 53481 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 53540 | ||||| | || ||| |||| ||| | || || | || || || || || | Sbjct 4499 AATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCT 4440 Query 53541 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 53600 |||| ||||| || || |||| ||||||| |||| || | | |||||| |||| ||||| Sbjct 4439 GAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGAGGAT 4380 Query 53601 AATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCA 53660 ||||||| |||||||| |||||||| | ||| | || | ||| || || || | Sbjct 4379 AATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAA 4320 Query 53661 GTTTGAGAAAATCAAATTGTCCATCT-ATTA-------CAAACATGTTCAATGCAATAGA 53712 | || |||| ||||| |||| |||| |||||||||| | |||||||| Sbjct 4319 GCTTTTGAAAGTCAAAA-----ATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGA 4265 Query 53713 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 53772 ||||| |||||||| |||| ||| | | | | ||||| || || || ||||| | Sbjct 4264 CGCCAGGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAA 4205 Query 53773 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 53832 ||| || || || |||||||| | ||||| ||| ||||| ||| |||| || | |||||| Sbjct 4204 ATTGCTGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTT 4145 Query 53833 ATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC-GA 53891 ||| | || | || || |||||||||| || | ||| || || || ||| | || Sbjct 4144 ATATAACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGTGA 4085 Query 53892 CACGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT 53950 | |||| || ||| | ||| | | | || || |||| ||| | |||||| Sbjct 4084 CT-GAGCTTTAATTTTTCTATTAGCACGGCCTT-CTTTTTCATATTTTTCATACAACTTC 4027 Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||| || |||||||||| | || | || || |||| || |||||||| | ||| Sbjct 4026 TCAAATTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGAC 3967 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 || ||||| ||| | || ||||||||||| |||||||||||||| ||||| |||| Sbjct 3966 CAGTCTCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAAT 3907 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 | || | | || ||||| || ||||||||||| ||||| | || | ||| | | | Sbjct 3906 AAGTCACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAA 3847 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 ||||| |||||||| || ||||| || || | | | || |||| ||| || || Sbjct 3846 ATATCTGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCT 3787 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 || |||| || | || |||||| ||||||||||||| || | | |||||| ||| Sbjct 3786 TGGTCTACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGAT 3727 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGAC 54308 | ||||| || ||| | ||| | |||| | || |||||| | | |||||| | Sbjct 3726 GTTCCATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGAT--TC 3669 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || || ||| || || | ||| ||| ||| || | | | || || | Sbjct 3668 CAATTCCTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTT 3609 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | || ||| | | ||| |||| | |||||| |||| ||| | | || ||| Sbjct 3608 CAATGGAATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTG 3549 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | ||| |||||| || |||||||| || ||||| ||||||||||||| | |||||| | Sbjct 3548 CAGCAGCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATG 3489 Query 54489 TCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 | || || || | || || || || | || ||||| |||| || | ||| ||||| Sbjct 3488 TTTCAATGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAACATA 3430 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607 ||||| ||||| || || | || || | ||| ||||| || || ||| | ||| Sbjct 3429 TGCTGTGGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTC 3370 Query 54608 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| ||||| || |||||| ||| || || || || || || Sbjct 3369 TTAAAGCCAAAGTAATTGTATCCAAAATCACGGTCATATATGAT 3326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592442122530480