Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6671 113 4e-20 >seq6671 Length=4556 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| ||||||||||| ||| || ||||| || Sbjct 3980 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCA 4039 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || ||| || || |||||| | || ||| ||| Sbjct 4040 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 4099 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | ||||| || ||||| |||||||||||| || || |||| |||||| Sbjct 4100 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAAT 4159 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || |||||||| ||||||||| ||||||| || |||| || || Sbjct 4160 ATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGG 4206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| ||||||||||| ||| || || || || Sbjct 4208 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 4267 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || ||| || || |||||| | || ||| || Sbjct 4268 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 4327 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | |||||||| ||||| || ||||||||| || || |||| |||||| Sbjct 4328 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAAT 4387 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || || |||||||||||| |||| || || |||| || || Sbjct 4388 ATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGG 4434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 ||||||||||| || | |||||| | || || || || || ||| ||| || || Sbjct 3521 AAAATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCA 3580 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | || ||||| || ||||||||| | || ||| Sbjct 3581 TCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAC 3640 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||| | | ||||| || ||||| |||||||||||| || || |||| ||| Sbjct 3641 CAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTAC 3700 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || |||||||| ||||||||| ||||||| || |||| || || Sbjct 3701 AATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGG 3750 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| ||||||||||| ||| || || || || Sbjct 3752 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCA 3811 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||| || ||| || || |||||| | || ||| || Sbjct 3812 GACACCATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 3871 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | |||||||| ||||| || ||||||||| || || |||| |||||| Sbjct 3872 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAAT 3931 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || || |||||||||||| |||| || || |||| || || Sbjct 3932 ATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTCTACGCGGTGG 3978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409933659567014