Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6671 114 2e-20 seq76123 107 3e-18 seq153791 102 1e-16 >seq6671 Length=4556 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||||| || || || || || || | || | || || Sbjct 3523 AATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAGCCATC 3582 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| ||||| ||||| ||||||||||| ||||| || || Sbjct 3583 TGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACCA 3642 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || || || ||||| || ||| |||| ||||| || || || Sbjct 3643 ACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAA 3702 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || ||||| ||| | || ||||| || ||| |||| ||||| || Sbjct 3703 TATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGTCTACGCGGTGGCAT 3753 >seq76123 Length=2128 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 ||||||||||||||||| ||||| ||||| ||| | | |||||||| || || ||||| Sbjct 1124 CAAGATAAAGAAGGTATTCCACCAGATCAGCAACGTTTAATTTTTGCTGGTAAGCAATTG 1065 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | || |||||| || ||||| || |||||||| || || | ||| |||| Sbjct 1064 GAAGATGGACGCACATTATCCGACTATAACATCCAAAAAGAGTCGACACTTCATCTGGTG 1005 Query 124749 TTACGTTTACGAGGTGGTATTA 124770 | || || || |||||||||| Sbjct 1004 CTCCGCTTGCGTGGTGGTATTA 983 >seq153791 Length=3075 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 ||||| | ||||| | || || || |||||||| | | | ||||| || |||||| Sbjct 2744 ATTCAGCAAAAAGAGGAAATTCCTCCAGATCAACAGCGTTTGGTATTTGCTGGCAAACAA 2685 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 || || ||| |||| ||||| || |||||||| ||||||||||| |||||||||||| Sbjct 2684 TTGGAAGATGGTCGCACATTCTCCGACTATAATATCCAAAAAGAATCTACTTTGCATTTG 2625 Query 124746 GTTTTACGTTTACGAGGTGGT 124766 || || ||| |||| | |||| Sbjct 2624 GTGTTGCGTCTACGGGTTGGT 2604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753827982876800