Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq40997 98.7 1e-15 seq129586 96.9 4e-15 seq154088 95.1 1e-14 seq119855 93.3 5e-14 seq106367 93.3 5e-14 seq145979 91.5 2e-13 seq117040 91.5 2e-13 seq108307 91.5 2e-13 seq6671 84.2 2e-11 seq83617 82.4 9e-11 >seq40997 Length=1906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1604 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1663 Query 60126 TACTACCGAGGA--TTGAATATATAACT 60151 ||||| |||||| ||||||| ||||| Sbjct 1664 TACTATCGAGGATGTTGAATACCTAACT 1691 >seq129586 Length=2124 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1003 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 944 Query 60125 ATACTACCGAGGA-TTGAAT 60143 |||||| |||||| |||||| Sbjct 943 ATACTATCGAGGACTTGAAT 924 >seq154088 Length=1757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 782 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 841 Query 60125 ATACTACCGAGGAT-TGAA 60142 |||||| ||||||| |||| Sbjct 842 ATACTATCGAGGATATGAA 860 >seq119855 Length=2000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 || || ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| Sbjct 1534 AACTTGTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTA 1475 Query 60119 ACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 1474 ACCACTATACTATCGAGGA 1456 >seq106367 Length=1215 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 287 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 346 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 347 ATACTATCGAGGAT 360 >seq145979 Length=1469 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 535 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 594 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 595 ATACTATCGAGGA 607 >seq117040 Length=3332 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2233 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2292 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 2293 TACTATCGAGGAT 2305 >seq108307 Length=1408 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1185 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1126 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1125 ATACTATCGAGGA 1113 >seq6671 Length=4556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || |||||||||||| || | ||| ||||| || |||||||| || | | Sbjct 4206 CCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 4147 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || | ||||| |||||||| || | ||||| ||||| | || Sbjct 4146 AATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGA 4087 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| | || | |||| || | | ||||| | ||| || Sbjct 4086 ATACCTTCCTTGT-CTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGAC 4028 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || | ||||| || ||||| ||||| Sbjct 4027 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 >seq83617 Length=6259 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||||||||||||||||||| ||| || || | ||||| ||| ||||| || | Sbjct 1489 CGCAACACCAAATGCAATGTGGACTCGTTCTGCACGTTGTAGTCAATAAGAGTGCGATGA 1548 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || | |||||||| ||||||||||| | || |||| | ||| | |||||| || Sbjct 1549 TCTTGCAGCTGCTTGCCAGCGAATATCAAGCGTTGCTCCTTCTTCGGGATGCTCTCTTTC 1608 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| | | | || | || | | ||| || |||| | | ||||| || | |||||| Sbjct 1609 TCC-TCAATCTTGGATTTCACCTGGCCAACGGTGTAGTACTCCTCCACGTCCAGCGTGAT 1667 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || ||| ||||| | ||| || |||||| Sbjct 1668 GGTGCGACCATTTAATGTCTTGATAAATATCTGCATT 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570585325924280