Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6671 118 8e-22 >seq6671 Length=4556 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || ||| |||||||| || ||||||||| || | |||| | || Sbjct 4191 AACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCT 4132 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || ||||| ||||| ||||||||||| || || | ||| |||||||| Sbjct 4131 TCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCT 4072 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | | |||| || ||||||| ||| || || Sbjct 4071 TGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGACCTCCAAGGTGATGGTT 4012 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| |||| |||||| || ||||| |||||| Sbjct 4011 TTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3979 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || ||| |||||||| || ||||||||| || | |||| | || Sbjct 3735 AACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAATGTGCGACCATCT 3676 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || ||||| ||||| ||||||||||| || || | ||| || ||||| Sbjct 3675 TCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGGAATACCTTCTTTGTCT 3616 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||||| | | |||| ||| || |||| ||| || ||| Sbjct 3615 TGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGACTTCCAAGGTGATTGTC 3556 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || || || ||||||||||||||||| ||| Sbjct 3555 TTACCAGTGAGTGTTTTCACAAAGATTTGCATTTTG 3520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394245092805421