Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq172366 475 3e-129 seq6671 113 4e-20 seq169730 105 6e-18 seq133814 84.2 2e-11 >seq172366 Length=6938 Score = 475 bits (526), Expect = 3e-129 Identities = 1272/1938 (66%), Gaps = 27/1938 (1%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || || ||||| ||||| || || ||||| || ||||| || | ||||||||| || Sbjct 5184 TTATCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCCA 5125 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || ||||| |||||| || || ||||| || || || | |||||||| | || Sbjct 5124 GTTTTAAGACCAGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTTCCATAGTTGGGT 5065 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | || | || ||||||||||| ||||| || || ||||||| ||| || ||| Sbjct 5064 TCTGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAGCC 5005 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || || || || | || |||||||| || |||||||| | | | || | Sbjct 5004 ATTTTAATTGTTGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCGAATGGGT 4945 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 || || | ||| || | || | || || | | ||| || ||| || || Sbjct 4944 TTAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATTCTTCATA 4885 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 | || | ||| || ||| |||| | |||| ||| || ||| | || || |||||| Sbjct 4884 TTGTCATCCCATAATTCGAGTTCGGTAAGATCTCTGAGAAGGTGATGATTAACAACTTGA 4825 Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 || || || || || || || | | ||| || || || || ||||||| || |||||| Sbjct 4824 AATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAAGGATTCA 4765 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 || ||||| || || ||||| || || || || ||||| || || | |||| || || Sbjct 4764 TTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAGTAAAGAATTC 4705 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATCGACCAGTCCCACAGATCGGACG 22643 | | || || || |||||||| ||| | |||| ||| ||||||| || | | Sbjct 4704 CGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATT--CCAATCCCACAAGTCTGTTG 4647 Query 22644 GCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGT 22703 | || || ||||||||| ||||||||||| || ||| || | || || ||||| | Sbjct 4646 GTGTAAC---GTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGACTCCCTTCAT 4590 Query 22704 ACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAAT 22763 | | ||| || || || | || | || | ||||||||| ||||| || || || || | Sbjct 4589 ATGATTCATAAGGCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAATGCCCCATAGT 4530 Query 22764 ATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATAC 22823 | || || || || |||| | || ||| || | ||||| || || || Sbjct 4529 AGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTCATATGGGTAAC 4470 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 |||||| | | || || || | |||||||| || || || || ||||| | | ||| Sbjct 4469 GCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATGTCTCA 4410 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 ||| || || || ||||| | |||||| |||| ||| || || | ||||| | Sbjct 4409 TATTTGATTTCTTAGCTTCGGGAAGAGGATAATAATTGATATCTATGATTTTATTCAAAT 4350 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT-GT 23002 || | || || |||| || | | |||||| ||| | ||| | Sbjct 4349 TTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAAAAT--CTTATTAGC 4292 Query 23003 ACAA-CAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061 | || ||||| |||| | || || || || || || || || || | |||||| | Sbjct 4291 AGAAACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTCGTCCGGTGC 4232 Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121 | || ||||||||||| || || | |||||| || || || || || | ||| | || Sbjct 4231 TGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAACATTTTTTTG 4172 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 ||| ||||||| ||||| |||||||| || | ||| || || || || || || || || Sbjct 4171 GTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGTTTCAACTTG 4112 Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC-----GCACGTACCTG 23236 | || ||||| || ||||| | |||||| | || || ||||| | Sbjct 4111 TGCTTCAATGATAGCAAACCACAGTGACTGAGCTTTAATTTTTCTATTAGCACG-----G 4057 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 ||||||| || || |||| |||||| |||||||| | || || || | || Sbjct 4056 CCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAAAGTTCATCAAGC 3997 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| ||| |||||||| || ||| | ||| ||| |||||| ||||| Sbjct 3996 CCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCTACGCGTTTCATA 3937 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 |||||||| || ||||| |||||||| || | || || || | || ||||| || Sbjct 3936 AAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCTTTTCCT 3877 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 || || |||||||| || ||||| || || | || | |||||| ||||| | |||| Sbjct 3876 GTATTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAATAAATA 3817 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || |||||||| || || || ||| || || || || ||||| || || || | Sbjct 3816 GCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTATTAAAA 3757 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC-CACACTCGAACC 23595 ||||| | ||| ||||| | ||| || || | || || |||| | | | || Sbjct 3756 ACTCTCAACATAGGCACTAAACCATTTGATGTTCC-ATTAGTACCGCATATAGATGTTCC 3698 Query 23596 TTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 ||| ||||||| ||||| | || || || ||||| | |||||||| ||||| || Sbjct 3697 TTTAGCTCGAATACAATGAACATTGATTCCAATTCCTCCAGCTGATTTCGAAATCATTGC 3638 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 ||||||| | || | | | || || || ||| || || | | | ||| || Sbjct 3637 ACATTGTTCTACAGATTTGAAAATTCCTTCAATGGAATCTGCTACCATTGTAAGCAAAAA 3578 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 ||| || |||| ||| | | || || || | || | || || || || || Sbjct 3577 ACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCAGCAAATAAAGTTGGAGAAGCATGGGT 3518 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 ||||||| | || | | |||||| || || ||||| ||||| ||||| || ||||| Sbjct 3517 AAAGTATTTTTCAGAAAGCAAATTGTATGTTTCAATGGCAGCATCGATGTCTTCACCGTG 3458 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTA 23893 ||| || | | || | ||||| ||| | || |||||||| || | | | || ||| Sbjct 3457 TATTCCAACTGATACTCTCATCAACATATGCTGTGGTCTCTCTACAACTTTA--CCTTTA 3400 Query 23894 ATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCA 23953 | ||| | || ||||||||||| | || ||||| ||||| || | || ||| ||| Sbjct 3399 ACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAAGCCAAAGTAATTGTATCCAAAATCA 3340 Query 23954 CGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGA 24013 || || | | || |||||||||||||||| ||||| | | | ||||||||| Sbjct 3339 CGGTCATATATGATTGCCGAATTCAAACGGTCTGCATTTTCTCGAACTACATTGTAATGA 3280 Query 24014 AAATTCGATATCATCGGC 24031 || | ||||| || ||| Sbjct 3279 AAGTCAGATATTATAGGC 3262 >seq6671 Length=4556 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| |||||||| |||||| | || || ||||| || Sbjct 3979 CATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATC 4038 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||| | || || ||||| Sbjct 4039 AGACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCA 4098 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||||||||| || |||||||| | || || ||| || || Sbjct 4099 ACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAA 4158 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || ||||| |||||||| |||| Sbjct 4159 TATCCAGAAGGAATCCACTCTTCACTTGGT 4188 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| |||||||| |||||| | || || || || || Sbjct 4207 CATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATC 4266 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||| | || || ||||| Sbjct 4267 AGACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 4326 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || || |||||||| ||||||||||| || || ||| || || Sbjct 4327 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 4386 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || |||||||| |||| Sbjct 4387 TATCCAGAAAGAGTCTACTCTTCACTTGGT 4416 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| |||||||| |||||| | || || || || || Sbjct 3751 CATGCAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATC 3810 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||| | || || ||||| Sbjct 3811 AGACACCATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 3870 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || || |||||||| ||||||||||| || || ||| || || Sbjct 3871 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTACCTTGTCCGACTACAA 3930 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || |||||||| |||| Sbjct 3931 TATCCAGAAAGAGTCTACTCTTCACTTGGT 3960 Score = 102 bits (112), Expect = 7e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| |||||||| || || || || || || || || || |||||| | || || || Sbjct 3518 ATCAAA-ATGCAAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGA 3576 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || || |||| | | |||| || ||| | ||| ||||| ||||| | || || Sbjct 3577 GCCATCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACC 3636 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 ||||| |||||| | || ||||||||||| || |||||||| | || || ||| Sbjct 3637 AGACCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGA 3696 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || || || ||||| |||||||| |||| Sbjct 3697 CTACAATATCCAGAAGGAATCCACTCTTCACTTGGT 3732 >seq169730 Length=1905 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||||||||| || || |||||||| ||||| | || ||||| || Sbjct 1742 AATATGCAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCC 1801 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||||| |||||| | || |||||| || || | || || || Sbjct 1802 TCTGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 1861 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || |||||| | ||||| ||||||||||| |||||||| Sbjct 1862 CAACAGCGTTTGATATTTGCTGGCAAACAATTGGAAGA 1899 >seq133814 Length=2051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/156 (73%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 58323 TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAAC 58382 ||||||||| |||||| ||| || ||| | || || ||||| || || || |||||| Sbjct 2041 TACAACACGGCAAATCCATTTACATTCATGGAACTTATTTCGCTGGACGGAAAAACAAAC 1982 Query 58383 TTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTG 58442 |||||||| || ||||| ||||||||||||| | ||||| | |||| | ||| Sbjct 1981 TTTTTCGAGAAGAAAGTGGGCGAATATCAAAAGTGGGGCGTTA-CAGCG---AATCGTT- 1927 Query 58443 GAGGACGATATTTTCACTTTGGATGCTGCCTTTTAA 58478 |||| || | ||||| |||| |||| |||||| Sbjct 1926 -TGGACAATGTATTCACGCTGGACGCTGATTTTTAA 1892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444805767835920