Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq172366 630 9e-176 >seq172366 Length=6938 Score = 630 bits (698), Expect = 9e-176 Identities = 1260/1848 (68%), Gaps = 26/1848 (1%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 62125 || || || ||||| | ||| |||||||| ||||| ||||| || || ||| | || || Sbjct 5154 GCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATAGAA 5096 Query 62126 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62185 ||| || || || || ||| | || ||||| | || || || | || ||||| Sbjct 5095 ATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTGACT 5036 Query 62186 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTC 62245 |||||| ||||| ||||| || || ||||||||||| || | | || || |||||| Sbjct 5035 TTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAATTGTTGATTTAACTGAAATTTC 4976 Query 62246 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGG 62301 ||||| || || || || || | ||| || |||| |||| ||| | || || | Sbjct 4975 CCAAACTGTCTTGTATAAGTCTCG-AATGGGTTTAGGAATAGTTTCTATGTTTTGTATAG 4917 Query 62302 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62361 | |||| | | ||||| |||||| || | |||| |||||||| ||||| | Sbjct 4916 AACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCGGTAA 4857 Query 62362 AAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 | |||| || || || | ||||| ||||| ||||| ||||| || || | || |||| Sbjct 4856 GATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGT 4797 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 | |||||| |||||||||||| | || ||||||||||| | ||||||||| || |||| Sbjct 4796 ATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATG 4737 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA--TTTTATC 62539 | || |||||||| || || | |||| ||| | | ||| ||||| || |||| || Sbjct 4736 CTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACC--ATGTTTGGAAATTTTCTC 4679 Query 62540 TTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAG 62599 || | | | ||||| ||| | || | ||| ||| ||||| | Sbjct 4678 CTTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAA 4619 Query 62600 AATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTA 62658 | ||||| || | | || ||| |||||| ||||| || ||| | | || |||| Sbjct 4618 TACCCCGTTGCTTACAGGACTC-CCTTCATATGATTCATAAGGCCCTAACATTTCCGCTA 4560 Query 62659 GTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT 62718 || || || ||||||||||| || || || || |||||||| || | |||||| Sbjct 4559 ATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATA 4500 Query 62719 CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTT 62778 | ||||| | || ||| |||| ||| | || || | || || || || || | Sbjct 4499 AATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCT 4440 Query 62779 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62838 |||| ||||| || || |||| ||||||| |||| || | | |||||| |||| ||||| Sbjct 4439 GAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGAGGAT 4380 Query 62839 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 62898 ||||||| |||||||| |||||||| | |||| | || | ||| || || || | Sbjct 4379 AATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAA 4320 Query 62899 GTTTGAGAAAATCAAATCGCCCAT---CTATTACAAACATGTTCAATGCAACAGATGCCA 62955 | || |||| ||||| | || | ||||||||||| | |||| ||| |||| Sbjct 4319 GCTTTTGAAAGTCAAAAATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGACGCCA 4260 Query 62956 GATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 63015 | ||||| || |||| ||| | | | | ||||| || || || ||||| | ||| | Sbjct 4259 GGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGC 4200 Query 63016 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 | || || || ||||| | ||||| ||| ||||| ||| |||| || | ||||||||| | Sbjct 4199 TGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATA 4140 Query 63076 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC-GACTCGA 63134 || | || || |||||||||| || | ||| || || || ||| | |||| || Sbjct 4139 ACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGTGACT-GA 4081 Query 63135 GCCTTTATTATAG-ATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAA 63193 || || ||| | ||| | | |||| || |||| ||| |||||| || || Sbjct 4080 GCTTTAATTTTTCTATTAGCACGGCCTT-CTTTTTCATATTTTTCATACAACTTCTCAAA 4022 Query 63194 CTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTC 63253 || |||||||||| | || | | || |||| || |||||||| | ||||| || Sbjct 4021 TTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTC 3962 Query 63254 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63313 ||| ||| | || ||||||||||| |||||||||||||| ||||| ||||| || Sbjct 3961 TCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTC 3902 Query 63314 TCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63373 | | || ||||| || ||||||||||| ||||| | || | ||| | | |||||| Sbjct 3901 ACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATC 3842 Query 63374 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63433 |||||||| || ||||| || || || | | || |||| ||| || || || || Sbjct 3841 TGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTC 3782 Query 63434 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63493 || || | || |||||| ||||||||||||| || | | ||| |||||| | || Sbjct 3781 TACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTCC 3722 Query 63494 ATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA--ATTGATAGACCTATT 63551 ||| |||||| | ||| | ||| | || |||||| | | |||||| || ||| Sbjct 3721 ATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGAT--TCCAATT 3664 Query 63552 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATG 63611 || || || ||| || || | ||| ||| ||| || | | | || ||||| ||| Sbjct 3663 CCTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATG 3604 Query 63612 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCA 63671 ||| | | ||| |||| | |||||| |||| ||| | | | ||| | ||| Sbjct 3603 GAATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCA 3544 Query 63672 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63731 |||||| || |||||||| || ||||| ||||||||||||| | |||||| || ||| Sbjct 3543 GCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATGTTTCA 3484 Query 63732 ATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63790 || || | || || || || | || ||||| |||| || | ||| ||||| ||||| Sbjct 3483 ATGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAACATATGCTG 3425 Query 63791 AGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63850 ||||| || |||| ||| || | ||| | ||| || || ||| | ||| ||||| Sbjct 3424 TGGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAA 3365 Query 63851 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 ||||| || |||||| ||| || || || || || || ||||||| Sbjct 3364 GCCAAAGTAATTGTATCCAAAATCACGGTCATATATGATTGCCGAATT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628460335199280