Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq172366 518 3e-142 >seq172366 Length=6938 Score = 518 bits (574), Expect = 3e-142 Identities = 1235/1854 (67%), Gaps = 32/1854 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| ||||| ||| | || | || || | || |||||||||||||||| Sbjct 5181 TCAACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCCAGTT 5122 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || |||| | || ||||| || || || ||| | || || || || Sbjct 5121 TTAAGACCAGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTTCCATA-GTTGGGTTC 5063 Query 36910 T-CTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | | | | || | | || ||||||||||| || || || ||||| || || ||||| Sbjct 5062 TGCAACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAGCCAT 5003 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 || | | |||| || || |||||||| || || |||| | | || | Sbjct 5002 TTTAATTGTTGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCGAATGGGTTT 4943 Query 37029 TGGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTC 37085 || | | |||| | ||| ||||||||| | | | | |||| |||||| || | Sbjct 4942 AGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATTCTTCATATT 4883 Query 37086 ATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 | || ||| || ||| | || | || ||||| | ||||| |||| ||||| ||| Sbjct 4882 GTCATCCCA--TAATTCGAGTTCGGTAAGATCTCTGAGAAGGTGATGATTAACAACTTGA 4825 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || |||||||| || | ||||| |||||||| ||||| ||||||| ||| ||| Sbjct 4824 AATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTCAAAGGATTCA 4765 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 ||||| | || ||||||| ||||||||| |||||||| || || | || | ||| Sbjct 4764 TTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAGTAAAGAATTC 4705 Query 37264 CTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGG 37323 | | |||||| | |||| ||| || | ||||||||||||| || |||||||| Sbjct 4704 CGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCCACAAGTCTGTTGG- 4646 Query 37324 TTCTTTAA----CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATA 37379 | ||| |||||| || ||||| | | || || || | ||| | | ||| Sbjct 4645 ---TGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGACTCCCTTCATA 4589 Query 37380 TGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATA 37439 || |||||||| || | |||| |||| |||||| |||| |||| ||| |||| || Sbjct 4588 TGATTCATAAGGCCCTAACATTTCCGCTAATTCGCAGCTAGCCTCTAATGCCCCATAGTA 4529 Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCC 37499 |||||||| || ||||| |||||||||| | ||||| || || || ||| || | Sbjct 4528 GATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTCATATGGGTAACG 4469 Query 37500 CAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTT 37559 || | ||| | ||||||| || |||||||| || || |||||||||| |||| || | Sbjct 4468 CATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCGATGTCTCAT 4409 Query 37560 ATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 ||| ||| | | ||| | |||||||||||||||||||| |||||||| | ||| Sbjct 4408 ATTTGATTTCTTAGCTTCGGGAAGAGGATAATAATTGATATCTATGATTTTATTCAAATT 4349 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT---ATT 37676 ||| | | |||| |||| | | | | ||| | || ||| | ||||| | Sbjct 4348 TTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAAAATCTTATTAGCAGA 4289 Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736 |||||| | | | | |||||| | || ||||| ||||| | || || || | || Sbjct 4288 AACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTCGTC--CGGTGCT 4231 Query 37737 --AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGA 37794 | ||| || ||| ||||| || | ||| || || |||| ||||| | ||| |||| Sbjct 4230 GAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAACATTTTTTTGG 4171 Query 37795 TTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGA 37854 || |||| | || |||||||| ||||||| ||||| || ||||| ||| | ||| Sbjct 4170 TTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGTTTCAACTTGT 4111 Query 37855 GCCTCGATAATAGATTTCCATA--AACTTCTTGCTTTAACGATCGCTTTA--Attttttt 37910 || || || |||| ||| | ||| ||||||| | ||| | || Sbjct 4110 GCTTCAATGATAGCAAACCACAGTGACT--GAGCTTTAATTTTTCTATTAGCACGGCCTT 4053 Query 37911 CTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCC 37970 ||| |||| |||| | ||| || || | ||| || | ||||| | || | || Sbjct 4052 CTT--TTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAAAGTTCATCAAGCCC 3995 Query 37971 TGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAA 38030 || |||| ||||||||||| ||||| ||| |||| ||||||||||| |||||| Sbjct 3994 GGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCTACGCGTTTCATAAA 3935 Query 38031 TAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTAC 38090 | |||||| | ||| | || |||||| || | || | ||| || || ||| Sbjct 3934 AAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGTTCATCTTTTCCTGT 3875 Query 38091 ATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 ||| ||| | ||| || ||| ||||| ||||| | ||||| || || | |||||| | Sbjct 3874 ATTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGCTCCAAATAAATAGC 3815 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | || || || ||||| | || || || | | ||| | || |||||| | | Sbjct 3814 GAACGCGCCGGGCCTTTTTCCGCCACCTTGGTCTACATAACGTGCTACATTATTAAAAAC 3755 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 ||| |||||||| |||| |||||| ||| | || || ||||| ||||| | || || || Sbjct 3754 TCTCAACATAGGCACTAAACCATTTGATGTTCCATTAGTACCGCATATAGATGTTCCTTT 3695 Query 38271 AGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCA 38330 |||||| ||| | | | ||| ||||| || || ||| || || | || || Sbjct 3694 AGCTCGAATACAATGAACATTGATTCCAATTCCTCCAGCTGATTTCGAAATCATTGCACA 3635 Query 38331 TTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390 ||||| || | | || || ||||| || || | |||| || | |||||| Sbjct 3634 TTGTTCTACAGATTTGAAAATTCCTTCAATGGAATCTGCTACCATTGTAAGCAAAAAACA 3575 Query 38391 ACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 | |||| ||| ||| | ||| | || |||||| || ||||| ||||| | || Sbjct 3574 AGATGACAGTTGTGGCCTTCTTGTTGCAGCAGCAAATAAAGTTGGAGAAGCATGGGTAAA 3515 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 ||||||| || | |||| |||||||| || || |||| || || | ||||| || Sbjct 3514 GTATTTTTCAGAAAGCAAATTGTATGTTTCAATGGCAGCATCGATGTCTTCACCGTGTAT 3455 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTT 38570 || | ||||| ||||| | |||||| |||||||| |||| | |||| || ||| Sbjct 3454 TCCAACTGATACTCTCATCAACATATGCTGTGGTCTCTCTACAACTTTACCTTTAACTTT 3395 Query 38571 AAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATC 38624 ||| | ||| || ||| | || || | ||||| ||| | ||| | |||| Sbjct 3394 AAGCAAATATGAACGTTCAAGAGTCTTAAAGCCAAAGTAATTGTATCCAAAATC 3341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467515123199440