Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq172366 643 1e-179 >seq172366 Length=6938 Score = 643 bits (712), Expect = 1e-179 Identities = 1262/1848 (68%), Gaps = 26/1848 (1%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 64918 || || || ||||| | ||| |||||||| ||||| ||||| || || ||| | || || Sbjct 5154 GCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATAGAA 5096 Query 64919 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 64978 ||| || || || || ||| | || ||||| | || || || | || ||||| Sbjct 5095 ATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTGACT 5036 Query 64979 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 65038 |||||| ||||| ||||| || || ||||||||||| || | | || || |||||| Sbjct 5035 TTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAATTGTTGATTTAACTGAAATTTC 4976 Query 65039 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGG 65094 ||||| || || || || || | ||| || |||| |||| ||| | || || | Sbjct 4975 CCAAACTGTCTTGTATAAGTCTCG-AATGGGTTTAGGAATAGTTTCTATGTTTTGTATAG 4917 Query 65095 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154 | |||| | || ||||| |||||| || | |||| |||||||| ||||| | Sbjct 4916 AACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCGGTAA 4857 Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 | |||| || || || ||||||| ||||||||||| ||||| || || | || |||| Sbjct 4856 GATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGT 4797 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 | |||||| |||||||||||| | || ||||||||||| | ||||||||| || |||| Sbjct 4796 ATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATG 4737 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA--TTTTATC 65332 | || |||||||| || || | |||| ||| | | ||| ||||| || |||| || Sbjct 4736 CTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACC--ATGTTTGGAAATTTTCTC 4679 Query 65333 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 65392 || | || | ||||| ||| | || | ||| ||| ||| | Sbjct 4678 CTTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAA 4619 Query 65393 AATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 65451 | ||||| || | | || ||| |||||| || || || ||| | | || |||| Sbjct 4618 TACCCCGTTGCTTACAGGACTC-CCTTCATATGATTCATAAGGCCCTAACATTTCCGCTA 4560 Query 65452 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 65511 ||| || || ||||||||||| || || || || ||||| || || | |||||| Sbjct 4559 ATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATA 4500 Query 65512 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 65571 | ||||| | || ||| |||| ||| | || || | || || || || || | Sbjct 4499 AATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCT 4440 Query 65572 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 65631 |||| ||||| || || |||| ||||||| |||| || | | |||||| |||| ||||| Sbjct 4439 GAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGAGGAT 4380 Query 65632 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 65691 ||||||| |||||||| |||||||| | |||| | || | ||| || || || | Sbjct 4379 AATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAA 4320 Query 65692 GTTTGAGAAAATCAAATCGCTCAT---CTATTACAAACATGTTCAATGCAACAGATGCCA 65748 | || |||| ||||| || || | ||||||||||| | |||| ||| |||| Sbjct 4319 GCTTTTGAAAGTCAAAAATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGACGCCA 4260 Query 65749 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 65808 | |||||||| |||| ||| | | | | ||||| || || || ||||| | ||| | Sbjct 4259 GGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGC 4200 Query 65809 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 65868 | || || |||||||| | ||||| ||| ||||| ||| |||| || | ||||||||| | Sbjct 4199 TGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATA 4140 Query 65869 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC-GACTCGA 65927 || | || || |||||||||| || | ||| || || || ||| | |||| || Sbjct 4139 ACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGTGACT-GA 4081 Query 65928 GCCTTTATTATAG-ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 65986 || || ||| | ||| | | | || || |||| ||| | |||||| || || Sbjct 4080 GCTTTAATTTTTCTATTAGCACGGCCTT-CTTTTTCATATTTTTCATACAACTTCTCAAA 4022 Query 65987 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 66046 || |||||||||| | || | || || |||| || |||||||| | ||||| || Sbjct 4021 TTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTC 3962 Query 66047 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATC 66106 ||| ||| | || ||||||||||| |||||||||||||| ||||| |||||| || Sbjct 3961 TCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTC 3902 Query 66107 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 66166 | | || ||||| || ||||||||||| ||||| | || | ||| | | |||||| Sbjct 3901 ACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATC 3842 Query 66167 ATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 66226 ||||||| || ||||| || || || | | || |||| ||| || || || || Sbjct 3841 TGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCTTGGTC 3782 Query 66227 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 66286 || || | || |||||| ||||||||||||| || | | |||||| ||||| || Sbjct 3781 TACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGATGTTCC 3722 Query 66287 ATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA--ATTGATAGACCTATT 66344 ||| || ||| | ||| | |||| | || |||||| | | |||||| || ||| Sbjct 3721 ATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGAT--TCCAATT 3664 Query 66345 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 66404 || || || ||| || || | ||| ||| ||| || | | | || || || || Sbjct 3663 CCTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTTCAATG 3604 Query 66405 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 66464 ||| | | ||| |||| | |||||| |||| ||| | | || ||| | ||| Sbjct 3603 GAATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTGCAGCA 3544 Query 66465 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 66524 |||||| || |||||||| || ||||| ||||||||||||| | |||||| || ||| Sbjct 3543 GCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATGTTTCA 3484 Query 66525 ATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 66583 || || | || || || || | || ||||| |||| || | ||| ||||| ||||| Sbjct 3483 ATGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAACATATGCTG 3425 Query 66584 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 66643 ||||| || || | || || | ||| | ||| || || ||| | ||| ||||| Sbjct 3424 TGGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAA 3365 Query 66644 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 ||||| || |||||| ||| || || || || || || |||| || Sbjct 3364 GCCAAAGTAATTGTATCCAAAATCACGGTCATATATGATTGCCGAATT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656754429388840