Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq172366 154 1e-32 seq6671 125 7e-24 seq5352 96.9 3e-15 >seq172366 Length=6938 Score = 154 bits (170), Expect = 1e-32 Identities = 829/1308 (63%), Gaps = 44/1308 (3%) Strand=Plus/Minus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 || |||||||| | ||| || || || ||||| ||||| ||||| || || || Sbjct 5178 ACAGTAAATTGTATAGCATTAGCGGCTGGCTTGGTACGCAAATAATACATTCCAGTTTTA 5119 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGT-CGGC 152839 || ||| | ||| | || | || | || | | ||| ||| ||| |||| | || Sbjct 5118 AGACCAGCCTTCCAAGCATAGAAATGAATTGAAGTGAGCTTT-CCATAGTTGGGTTCTGC 5060 Query 152840 CATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899 | || | ||||||||| |||||||||||||| || || |||||||| || ||||| | Sbjct 5059 AACGTGAATGTTAAACGACTGACTTTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTT 5000 Query 152900 GATCATGAATTTTCCGTTGTTGTGCCAGCA--TTCCCAGATTGTCATGTACAGCTTTTTA 152957 |||| |||| | | | | | |||||| | |||| |||| | | | | Sbjct 4999 -------AATT----GTTGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCTCGA 4951 Query 152958 ATGTTGTCGGGAATTTCATCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTTTTC 153017 ||| | ||||| |||||| ||| || || || ||| || || ||| Sbjct 4950 ATGGGTTTAGGAATAGTTTCTATGTTTTGTATAGAACCACGACTTGATATAATTTGATTC 4891 Query 153018 CGCATACTACTTGTGTACAGAT---TCAA-TGCGATTAGATCATCGACCAAGTAGCGGTT 153073 |||| |||| | || || | | || | ||||| || | || | || Sbjct 4890 TTCATA----TTGTCATCCCATAATTCGAGTTCGGTAAGATCTCTGAGAAGGTGATGATT 4835 Query 153074 GACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTTC 153133 |||||||||||||| || || || ||||| || | | |||| | | ||||||| Sbjct 4834 AACAACTTGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGTTC 4775 Query 153134 AAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAG 153193 ||| || || || || || ||||| || || | || || ||||| || ||||| Sbjct 4774 AAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACAAG 4715 Query 153194 CAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCATAA 153253 || ||||| |||| || ||||| || ||| |||||| ||| ||||| || Sbjct 4714 TAAAGAATTCCGTACACCATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCCACAA 4655 Query 153254 CGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACC 153313 || ||| | | | ||||| ||||||||||||| ||| | ||| | || || Sbjct 4654 GTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAATACCCCGTTGCTTACAGGACTCCC 4595 Query 153314 GGCAAACGTGCTATACGGCTC--AC-TGTCAGACGCCAGTTTCAAACTGGCATCGAGCGC 153370 || | | ||| ||| | || | || ||| | || | || || || | || Sbjct 4594 TTCATATGATTCATAAGGCCCTAACATTTC---CGCTAATTCGCAGCTAGCCTCTAATGC 4538 Query 153371 GGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTA 153430 ||| || | ||||| | || || | || | |||| || || || | || Sbjct 4537 CCCATAGTAGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTTTCATA 4478 Query 153431 CGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACG 153490 || |||| || | | |||||| || || || |||| ||||| |||||||| || Sbjct 4477 TGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATGGGTCG 4418 Query 153491 ATGGCGCATATTAGAtttttttGCAGCTTC---AACAGGATAGAAATTGCGGTCGATAAT 153547 ||| | |||||| ||||| || |||||| || |||||| ||||| || || || Sbjct 4417 ATGTCTCATATTTGATTTCTT---AGCTTCGGGAAGAGGATAATAATTGATATCTATGAT 4361 Query 153548 TTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGT 153607 |||||| ||| | | || ||| || | | | |||||| ||||| | Sbjct 4360 TTTATTCAAATTTTTTGTAACTGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTCAAAAAT 4301 Query 153608 TCCATTAATG---ATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTC 153664 |||| | | | |||| | ||||| ||||||| ||| ||||| || | || Sbjct 4300 CTTATTAGCAGAAACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGCTATCTC 4241 Query 153665 GTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCA 153724 ||| || || |||||| ||| ||||| | ||||||||||||||||| || || Sbjct 4240 GTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGTTCCAAC 4181 Query 153725 ATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGT 153784 ||| |||| || ||||| | ||| |||| ||||| |||| ||| || ||||| || || Sbjct 4180 ATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGTTCCAGT 4121 Query 153785 TTCGGCTTGAATTTCTATAATAGTACGCATCAATGTGACCGCG-GGCATTTGATCGCGAA 153843 ||| |||| ||| || |||| | | || ||||| | | | || || | Sbjct 4120 TTCAACTTGTGCTTCAATGATAG--CAAACCACAGTGACTGAGCTTTAATTTTTCTATTA 4063 Query 153844 AC-TGGCCCTTGTCTTCGTAGTGTTTGTACCAGTATTCAAACTCATC-ACCAAACGTATT 153901 | |||| | | ||| || | || ||| | | ||||| || || || || || | Sbjct 4062 GCACGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAAAGT-TC 4004 Query 153902 GTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCG 153961 | |||| |||| |||| | ||||||||| |||||||| |||| || ||||| Sbjct 4003 ATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCTACGCG 3944 Query 153962 ACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGC 154009 |||||| | ||| |||| ||| || |||| | | ||| ||||| Sbjct 3943 TTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGC 3896 >seq6671 Length=4556 Score = 125 bits (138), Expect = 7e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| |||||| || ||||||| ||||||||||| || || || || ||| Sbjct 3979 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 3920 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | | ||||| | ||| || |||||| |||||| ||| ||||| || ||||| Sbjct 3919 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3860 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714 || ||||| ||||| ||| | || | || | |||| || | ||||| | ||||| Sbjct 3859 AATACCTTCCTTGTC-TTGAATCTTGGCCTTCAC-GTTCTCAATGGTGTCTGATGGCTCG 3802 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | || ||||||||||| || || ||||| || ||||| Sbjct 3801 ACCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| |||||| || ||||||| ||||||||||| || || || || ||| Sbjct 4435 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 4376 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | | ||||| | ||| || |||||| |||||| ||| ||||| || ||||| Sbjct 4375 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 4316 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | || | || | | || | ||||| | ||||| | Sbjct 4315 AATACCTTCCTTGTC-TTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGA 4257 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | || ||||||||||| || || ||||| || ||||| Sbjct 4256 CCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| |||||| || ||||||| || || || || || || || || ||| Sbjct 3751 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 3692 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||||| | || || ||||| |||||| ||| || || || || || Sbjct 3691 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 3632 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| |||||| ||| | | ||| | ||||| | ||||| || Sbjct 3631 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGAC 3572 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | ||||| || || |||||||| Sbjct 3571 TTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| |||||| || ||||||| || || || || || || || || ||| Sbjct 4207 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 4148 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||||| | || || ||||| |||||| ||| || || || || || Sbjct 4147 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 4088 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | || | || | | || || |||| | || || | Sbjct 4087 AATACCTTCCTTGTCT-TGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGA 4029 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | || ||||||||||| || || ||||| || ||||| Sbjct 4028 CCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 >seq5352 Length=5729 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 58287 GCCTCAATGTTGCCCAAATCGCCGACGTGTCGCACCGCAGCGTTAGGCGCGCCATGATTG 58346 || ||||| || || |||||||| | ||| || | | |||| || |||||||| | Sbjct 3150 GCTTCAATATTACCTAAATCGCCCAAGTGACGATTCTCGTCGTTCGGTGCGCCATGTTCT 3209 Query 58347 CTACCCGTAGGATTGAAATGTTCGCCGGCCGAAGTGCATCCGTTACTCATATCGCCAAAT 58406 | ||| |||||||||||| |||||||| ||||| ||||| | ||||||||||| Sbjct 3210 TTGCCCTCGGGATTGAAATGTGGACCGGCCGATGTGCAGCCGTTGGTATTATCGCCAAAT 3269 Query 58407 TCGTGCACGTGAAAGCCGTG-CAGTCCTTT 58435 |||||||| || ||||| || || ||||| Sbjct 3270 TCGTGCACATGGAAGCCATGTAAGCCCTTT 3299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494994975879200