Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq172366 655 0.0 >seq172366 Length=6938 Score = 655 bits (726), Expect = 0.0 Identities = 1273/1853 (69%), Gaps = 36/1853 (2%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAGAA 78797 || || || ||||| | ||| |||||||| ||||| ||||| || || ||| | ||||| Sbjct 5154 GCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATAGAA 5096 Query 78798 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 78857 ||| || || || || ||| | || ||||| | || || || | || ||||| Sbjct 5095 ATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTGACT 5036 Query 78858 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 78917 |||||| ||||| ||||| || || ||||||||||| || | | || || |||||| Sbjct 5035 TTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAATTGTTGATTTAACTGAAATTTC 4976 Query 78918 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGG 78973 ||||| || || || || || | ||| || |||| |||| ||| | || || | Sbjct 4975 CCAAACTGTCTTGTATAAGTCTCG-AATGGGTTTAGGAATAGTTTCTATGTTTTGTATAG 4917 Query 78974 ATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 79033 | |||| | || ||||| |||||| || | |||| |||||||| ||||| | Sbjct 4916 AACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCGGTAA 4857 Query 79034 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093 | |||| || || || ||||||| ||||||||||| ||||| || || | || |||| Sbjct 4856 GATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGT 4797 Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153 | |||||| |||||| ||||| | |||||||||||||| | ||||||||| || |||| Sbjct 4796 ATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATG 4737 Query 79154 CCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATC 79211 | || |||||||| || || | |||| ||| | | ||| ||| | | ||||| || Sbjct 4736 CTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACC--ATGTTTGGAAATTTTCTC 4679 Query 79212 TTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAG 79271 || | || | ||||||||| | || | || ||| | ||| | || ||||| | Sbjct 4678 CTTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTGCAA 4619 Query 79272 AATACCGTTACTAGCGTATGA--TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCT 79329 | ||||| || | | || ||| |||| ||||||||| ||| | |||| ||| Sbjct 4618 TACCCCGTTGCTTAC--AGGACTCCCTTCATATGATTCATAAGGCCCTAACATTTCCGCT 4561 Query 79330 AATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGA 79389 ||||| || || ||||||||||| || || || || ||||| || || | |||| | Sbjct 4560 AATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAAT 4501 Query 79390 TCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 79449 | ||||| || ||| |||| ||| | || || | || || || || || Sbjct 4500 AAATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCC 4441 Query 79450 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 79509 ||||| ||||| || || |||| ||||||| |||| || | | |||||| |||| |||| Sbjct 4440 TGAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGAGGA 4381 Query 79510 TAATAATTAATATCTATAATTTTATTGAGA---TTCCTGACTATTACTTTGACCACATCC 79566 |||||||| |||||||| |||||||| | | || | ||| || |||| || || Sbjct 4380 TAATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTT--TTTG-TAACTTCT 4324 Query 79567 TTTAGTTTGAGAAAATC--AAATCGT-CCATCTATTACAAACATGTTCAACGCGACAGAT 79623 || || || |||| || ||||| | | | ||||||||||| | || | ||| Sbjct 4323 TTAAGCTTTTGAAAGTCAAAAATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGAC 4264 Query 79624 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGG 79683 ||||| |||||||| |||| ||| | | | | ||||| || ||||| ||||| | Sbjct 4263 GCCAGGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAA 4204 Query 79684 TTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 79743 || || || ||||||||||| | ||||| ||| ||||| ||| |||| || | ||||||| Sbjct 4203 TTGCTGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTA 4144 Query 79744 TAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGAC 79802 || | || | || || |||||||||| || | ||| || || || ||| | ||| Sbjct 4143 TATAACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGTGAC 4084 Query 79803 TCGAGCCTTTATTATAGACTTGTATCTC--TTTTCTCTTTCGTATTGTGTATATAATCGT 79860 | |||| || ||| | || || | | |||| |||| |||| | ||| || Sbjct 4083 T-GAGCTTTAATTTT--TCTATTAGCACGGCCTTCTTTTTCATATTTTTCATACAACTTC 4027 Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || || || |||||||||| || || | || || |||| | |||||||| | ||| Sbjct 4026 TCAAATTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGAC 3967 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || ||||||||| | ||| ||||||||||| |||||||||||||| ||||| |||| Sbjct 3966 CAGTCTCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAAT 3907 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 | || | | || || || || ||||||||||| ||||| | || | ||| | | | Sbjct 3906 AAGTCACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAA 3847 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 ||||| |||||||| || ||||| || || || | | || || | ||| || || Sbjct 3846 ATATCTGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCACCT 3787 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || |||| || | || |||||| ||||||||||||| || | | |||||| ||| Sbjct 3786 TGGTCTACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTTGAT 3727 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGAC 80218 || ||||| || ||| | ||| | |||| | || |||||| | | |||||| | Sbjct 3726 GTTCCATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGAT--TC 3669 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | ||||| || || ||| || || | ||| ||| ||| || | | | || || | Sbjct 3668 CAATTCCTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTCCTT 3609 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338 | ||| ||| | | ||| |||| | |||||| |||| ||| | | || ||| Sbjct 3608 CAATGGAATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTGTTG 3549 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | ||| |||||| || |||||||| || ||||| |||||||||| || | |||||| | Sbjct 3548 CAGCAGCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGTATG 3489 Query 80399 TCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 | ||||| || | || || || || | || ||||| || | || | ||| ||||| Sbjct 3488 TTTCAATGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAACATA 3430 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| ||||| || || | || || | ||| | ||| || || ||| | ||| Sbjct 3429 TGCTGTGGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTC 3370 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 ||||| ||||| || |||||| ||| || || || || || || |||| || Sbjct 3369 TTAAAGCCAAAGTAATTGTATCCAAAATCACGGTCATATATGATTGCCGAATT 3317 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 |||||| ||||| || |||| ||| ||||| || || | || |||||||||||||| || Sbjct 2839 TTTTTTAGTTTCTTTATGTAAATTAGATACAGCAATCCGAGCAGCTAAAATGGCATAGTC 2780 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 | ||| | || || || |||| || ||||| || |||| | | || |||||| ||| Sbjct 2779 CGCATGGTTCGTTGTTAAACTGGCAGCAATTTCAGCCGCCAAATTATCTAATTCTTGCGT 2720 Query 80808 TGTTACTCCATTATATATTCCTTGGATAACCTT 80840 ||| || ||| ||| | || | ||||||||| Sbjct 2719 TGTGACACCACAATACAAGCCATTGATAACCTT 2687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716720921757640