Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq6671 123 2e-23 seq153791 86.0 5e-12 >seq6671 Length=4556 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || | |||||||| || | |||| ||||| || | |||||| ||||| Sbjct 3751 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 3692 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || | || |||||||| ||||| || || ||||| |||||||| || | || Sbjct 3691 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 3632 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| |||| || | ||| ||||| | |||||| Sbjct 3631 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGAC 3572 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || || ||||||||||| ||||||||||| Sbjct 3571 TTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTT 3521 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || | |||||||| || | |||| ||||| || | |||||| ||||| Sbjct 4207 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 4148 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || | || |||||||| ||||| || || ||||| |||||||| || | || Sbjct 4147 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 4088 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| | ||||| | ||| ||||| | ||||| Sbjct 4087 AATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGAC 4028 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| | ||| || || || || ||||| Sbjct 4027 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 >seq153791 Length=3075 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||||||| | ||| || ||||| | ||| || ||||| ||||| || | || Sbjct 2620 AACACCAAATGCAAAGTAGATTCTTTTTGGATATTATAGTCGGAGAATGTGCGACCATCT 2679 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||||||||| ||||| | ||| ||||||||||| | || | | ||||||| | Sbjct 2680 TCCAATTGTTTGCCAGCAAATACCAAACGCTGTTGATCTGGAGGAATTTCCTCTTTTT-G 2738 Query 43018 CTGA 43021 |||| Sbjct 2739 CTGA 2742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380568290151258