Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq172366 652 0.0 >seq172366 Length=6938 Score = 652 bits (722), Expect = 0.0 Identities = 1269/1856 (68%), Gaps = 39/1856 (2%) Strand=Plus/Minus Query 70822 GCGGCT---TTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACT-CCATCCGTA 70877 |||||| || ||||| | ||| ||||| || ||||| ||||| || || ||| | || Sbjct 5157 GCGGCTGGCTTGGTACGCAAATAATACATTCCAGTTTTAAGACC-AGCCTTCCAAGCATA 5099 Query 70878 AAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTG 70937 ||||| || || || || |||| | || || || | |||||| || | |||||| Sbjct 5098 GAAATGAATTGAAGTGAGCTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAACGACTG 5039 Query 70938 ACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAAT 70997 ||||||||| ||||| ||||| || || ||||||||||| || | | || || ||| Sbjct 5038 ACTTTGATCAATGAAAGCTCCTCTATCAGCAGCCATTTTAATTGTTGATTTAACTGAAAT 4979 Query 70998 TTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAA 71053 |||||||| || || || || || | ||| || |||| |||| ||| | || | Sbjct 4978 TTCCCAAACTGTCTTGTATAAGTCTCG-AATGGGTTTAGGAATAGTTTCTATGTTTTGTA 4920 Query 71054 TGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGG 71113 | || |||| | || ||||| ||| || || | |||| |||||||| |||| Sbjct 4919 TAGAACCACGACTTGATATAATTTGATTCTTCATATTGTCATCCCATAATTCGAGTTCGG 4860 Query 71114 TTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAG 71173 | | | |||| || || ||| ||||||| ||||||||||| ||||| || || | | | Sbjct 4859 TAAGATCTCTGAGAAGGTGATGATTAACAACTTGAAATTCACCAGATAAAACACGCCTTG 4800 Query 71174 TGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTG 71233 |||| |||||| |||||||||||| | || ||||||||||| | ||||||||| || | Sbjct 4799 TGTATATATTAGAGGTATACGGTTCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAG 4740 Query 71234 ATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGA--TTTT 71291 |||| || |||||||| || || | || | ||| | | ||||||| | ||| |||| Sbjct 4739 ATGCTGTAGGCATAGGAGCAACAAGTAAAGAATTCCGTACACCATGT--TTGGAAATTTT 4682 Query 71292 ATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNN 71351 || || | || | ||||| ||| | || | |||| ||| Sbjct 4681 CTCCTTCAAAGCATTCCAATCCCACAAGTCTGTTGGTGTAACGTCCCACATGTCGTATTG 4622 Query 71352 NNNNATGCCGTTACTAGCGTATGAT--CCTGCATATGTATCGTATGGTCCTTCTTTTTCG 71409 | ||||| || | | || ||| |||||| || || || ||| |||| Sbjct 4621 CAATACCCCGTTGCTTAC--AGGACTCCCTTCATATGATTCATAAGGCCCTAACATTTCC 4564 Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469 |||| ||| || || ||||||||||| ||||| || || ||||| || || | |||| Sbjct 4563 GCTAATTCGCAGCTAGCCTCTAATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTT 4504 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 | | ||||| | || ||| |||| ||| | || || | || || || || Sbjct 4503 AATAAATATGCTTGCTCACTTTCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAG 4444 Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATA 71589 || ||||| ||||| || || |||| |||||| |||| || | | |||||| |||| | Sbjct 4443 CCCTGAACCCCAATTCCTATGGGTCGATGTCTCATATTTGATTTCTTAGCTTCGGGAAGA 4384 Query 71590 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACTATTACTTTGACCACA 71646 ||||||||||| |||||||| |||||||| | |||| | ||| || |||| || Sbjct 4383 GGATAATAATTGATATCTATGATTTTATTCAAATTTTTTGTAACTGTT--TTTGTA-ACT 4327 Query 71647 TCCTTTAGTTTGAGAAAATCAAATCTCCCAT---CTATTACAAACACGTTCAAGGCAACA 71703 || || || || |||| ||||| || || | ||||||| ||| | |||| | Sbjct 4326 TCTTTAAGCTTTTGAAAGTCAAAAATCTTATTAGCAGAAACAAACATGTTTAGAGCAATA 4267 Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || ||||| |||||||| |||| ||| | | | | ||||| || |||||| ||||| Sbjct 4266 GACGCCAGGTTACAAACAGCTATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCAC 4207 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 | ||| || || || |||||||| | ||||| ||| ||||| ||| |||| || | |||| Sbjct 4206 AAATTGCTGCATTTAATGGTTCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCC 4147 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC- 71882 ||||| | ||| | || || |||||||||| || | ||| || || || ||| | Sbjct 4146 TTATATAACATATAAGGTGTTCCAGTTTCAACTTGTGCTTCAATGATAGCAAACCACAGT 4087 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAAT 71940 |||| |||| || ||| | ||| || | | |||| |||| |||| | ||| || Sbjct 4086 GACT-GAGCTTTAATTTT--TCTATTAGCACGGCCTTCTTTTTCATATTTTTCATACAAC 4030 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAAT 72000 || || || ||||||||| | || | || || |||| || |||||||| | | Sbjct 4029 TTCTCAAATTCTTCTCCCCAAAGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGT 3970 Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 ||||| ||||||||| | ||| ||||||||||| |||||||||||||| ||||| | Sbjct 3969 GACCAGTCTCCATCAGATTCTACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAA 3910 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 |||| || | | || || || || ||||||||||| ||||| | || | ||| | Sbjct 3909 AATAAGTCACGCGCCCTGTGTTCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCG 3850 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | |||||| |||||||| || ||||| || || || | | || |||| ||| || Sbjct 3849 AAAATATCTGAATGCCAAGGCTCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCCGCCA 3790 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 || || |||| || | || |||||| ||||||||||||| || | | |||||| Sbjct 3789 CCTTGGTCTACATAACGTGCTACATTATTAAAAACTCTCAACATAGGCACTAAACCATTT 3730 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATA 72298 |||| ||||| || ||| | ||| | |||| | || ||||| | || |||||| Sbjct 3729 GATGTTCCATTAGTACCGCATATAGATGTTCCTTTAGCTCGAATACAATGAACATTGAT- 3671 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || ||||| || || ||| || || | ||| ||| ||| || | | | || | Sbjct 3670 -TCCAATTCCTCCAGCTGATTTCGAAATCATTGCACATTGTTCTACAGATTTGAAAATTC 3612 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 | || || ||| | | ||| |||| | |||||| |||| ||| | | || | Sbjct 3611 CTTCAATGGAATCTGCTACCATTGTAAGCAAAAAACAAGATGACAGTTGTGGCCTTCTTG 3552 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 || | ||| |||||| || |||||||| || ||||| |||||||||| || | ||||| Sbjct 3551 TTGCAGCAGCAAATAAAGTTGGAGAAGCATGGGTAAAGTATTTTTCAGAAAGCAAATTGT 3492 Query 72479 ACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 | || ||||| || | || || || || | |||||||| || | || | ||| ||| Sbjct 3491 ATGTTTCAATGGCAGCATCGATGTCTTCACCG-TGTATTCCAACTGATACTCTCATCAAC 3433 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 |||||||| ||||| || || | || || | ||| | ||| || || ||| | | Sbjct 3432 ATATGCTGTGGTCTCTCTACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGA 3373 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 || ||||| ||||| || |||||| ||| || || || || || || ||||||| Sbjct 3372 GTCTTAAAGCCAAAGTAATTGTATCCAAAATCACGGTCATATATGATTGCCGAATT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669692886634760