Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq172366 176 5e-39 seq6671 105 7e-18 seq76123 84.2 2e-11 >seq172366 Length=6938 Score = 176 bits (194), Expect = 5e-39 Identities = 713/1108 (64%), Gaps = 34/1108 (3%) Strand=Plus/Minus Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGT 156553 || |||||||||||||| || || |||||||| || | | |||| | | ||||| Sbjct 4836 TTAACAACTTGAAATTCACCAGATAAAACACGCCTTGTGTATATATTAGAGGTATACGGT 4777 Query 156554 TCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACA 156613 ||||| || || || || || ||||| || || | || || ||||| || ||| Sbjct 4776 TCAAAGGATTCATTATTTCCTAGAATTTGAGCTGTAGATGCTGTAGGCATAGGAGCAACA 4717 Query 156614 AGCAATGAATTACGTAATCCGTATTTTTGTATATTTATT--TTCAACTGTGACCAGTCCC 156671 || || ||||| |||| || || |||| | |||| | ||||| ||| |||| Sbjct 4716 AGTAAAGAATTCCGTACACC--ATGTTTGGAAATTTTCTCCTTCAAAGCATTCCAATCCC 4659 Query 156672 ATAACGAAGTCGGT--ACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTT 156729 | || || ||| | ||| ||||| ||||||||||||| || | ||| | Sbjct 4658 ACAAGTCTGTTGGTGTAACGTC--CCACATGTCGTATTGCAATACCCCGTTGCTTACAGG 4601 Query 156730 GCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTCG 156787 || || || | | ||||||| | ||||| | || | |||| | || ||||| Sbjct 4600 ACTCCCTTCATATGATTCATAAGGCCC--TAACATTTCCGCTAATTCGCAGCTAGCCTCT 4543 Query 156788 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 156847 | || ||| || | |||||| ||||| |||| |||| | || || || Sbjct 4542 AATGCCCCATAGTAGATTGTTTCAAATATTTGGATATTTAATAAATATGCTTGCTCACTT 4483 Query 156848 ACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATG 156907 | || || |||| || | | |||||| || || || |||| ||||| || ||| Sbjct 4482 TCATATGGGTAACGCATCAGTATTAGTGCATCAGCGAAGCCCTGAACCCCAATTCCTATG 4423 Query 156908 GGACGATGGCGCATATTAGAtttttttGCAGTTTC---AATAGGGTAGAAATTGCGATCA 156964 || ||||| | |||||| ||||| || || ||| || ||| || ||||| ||| Sbjct 4422 GGTCGATGTCTCATATTTGATTTCTTAGC---TTCGGGAAGAGGATAATAATTGATATCT 4366 Query 156965 ATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTT-GAAAATC 157023 || |||||||||||| | | || ||||| | | | || || |||| || Sbjct 4365 ATGATTTTATTCAAATTTTTTGTAAC-TGTTTTTGTAACTTCTTTAAGCTTTTGAAAGTC 4307 Query 157024 AAAAGTATCATTATTG---ATATATTTATTGACGGCAATCGACGCTAGATTACATACGGC 157080 |||| | | |||| | | | | || | ||||| ||||| || ||||| || || Sbjct 4306 AAAAATCTTATTAGCAGAAACAAACATGTTTAGAGCAATAGACGCCAGGTTACAAACAGC 4247 Query 157081 AGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAA 157140 | ||||| || || |||||| ||| ||||| | ||||||||||||||||| || Sbjct 4246 TATCTCGTCCGGTGCTGAATATTCTACAATTTCTGTGCACAAATTGCTGCATTTAATGGT 4187 Query 157141 TCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGT 157200 ||| ||| |||| || ||||| | |||||||| ||||| |||||||| || ||||| Sbjct 4186 TCCAACATTTTTTTGGTTACTTTTTCTGTTGCAAGAATCCTTATATAACATATAAGGTGT 4127 Query 157201 GCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCG-GGCATTTGCT 157259 || ||||| |||| ||| |||| | || | | || || | | | || | Sbjct 4126 TCCAGTTTCAACTTGTGCTTCAATGA--TAGCAAACCACAGTGACTGAGCTTTAATTTTT 4069 Query 157260 CGCGAAAC-TGGCCTTTATCCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATAC 157318 | | | |||||| | || || | || ||| | | ||||| || || || | Sbjct 4068 CTATTAGCACGGCCTTCTTTTTCATATTTTTCATACAACTTCTCAAATTCTTCTCCCCAA 4009 Query 157319 GTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCA 157378 || | ||| || || | | |||||||||| |||||| || | ||| Sbjct 4008 AGTTCATCAAGCCCGGGGCATTTATGGGGACACATTAGTGACCAGTCTCCATCAGATTCT 3949 Query 157379 ACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTG 157438 |||||||||||||| | ||| |||| ||| | ||||| | || |||||||| || Sbjct 3948 ACGCGTTTCATAAAAAGATCAGGAATCCAGAGAGCGTAAAATAAGTCACGCGCCCTGTGT 3889 Query 157439 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGT 157498 || || | || | ||| || || ||||| || | ||| || ||||||| || Sbjct 3888 TCATCTTTTCCTGTATTTTTTTTCAAGTCTAAAAACTCGAAAATATCTGAATGCCAAGGC 3829 Query 157499 TCAACGTACACTGCTTGGGC-----TCCTTTTCGCTTGCCACCTTGATCCACGTGACGCA 157553 || | || | || || |||||| | ||||||||| || || | ||| Sbjct 3828 TCCAAATAAATAGCGAACGCGCCGGGCCTTTTTCC--GCCACCTTGGTCTACATAACGTG 3771 Query 157554 CCATATTATTAAAAACTCGCAGCATTGG 157581 | | |||||||||||||| || ||| || Sbjct 3770 CTACATTATTAAAAACTCTCAACATAGG 3743 >seq6671 Length=4556 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| |||||| || || |||| || ||||| || || || ||||| ||| Sbjct 3751 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 3692 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| ||||| | ||| || ||||| |||||| ||| || || || || || Sbjct 3691 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 3632 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||| ||| | | ||| | ||||| | || || || Sbjct 3631 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGAC 3572 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||| || || | |||||| || || |||||||| Sbjct 3571 TTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 3524 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| |||||| || || |||| ||||| ||||| || || ||||| ||| Sbjct 3979 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 3920 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | | ||||| | || || |||||| |||||| ||| ||||| || ||||| Sbjct 3919 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3860 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || || | | || | ||||| | || || || Sbjct 3859 AATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGAC 3800 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||||||||| || || ||||| || ||||| Sbjct 3799 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3752 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| |||||| || || |||| ||||| ||||| || || ||||| ||| Sbjct 4435 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 4376 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | | ||||| | || || |||||| |||||| ||| ||||| || ||||| Sbjct 4375 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 4316 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || || | | || | ||||| | || || || Sbjct 4315 AATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGAC 4256 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||||||||| || || ||||| || ||||| Sbjct 4255 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 4208 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| |||||| || || |||| || ||||| || || || ||||| ||| Sbjct 4207 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 4148 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| ||||| | ||| || ||||| |||||| ||| || || || || || Sbjct 4147 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 4088 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || || | | || | ||||| | ||||| || Sbjct 4087 AATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGAC 4028 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||||||||| || || ||||| || ||||| Sbjct 4027 CTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3980 >seq76123 Length=2128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || || | || | ||||| ||| || |||||||| ||||| || ||| Sbjct 988 CCACCACGCAAGCGGAGCACCAGATGAAGTGTCGACTCTTTTTGGATGTTATAGTCGGAT 1047 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| | ||| ||||||||| | || | |||||||||||| || || Sbjct 1048 AATGTGCGTCCA-TCTTCCAATTGCTTACCAGCAAAAATTAAACGTTGCTGATCTGGTGG 1106 Query 143077 TATGCCTTCTTTGTC 143091 || |||||||| || Sbjct 1107 AATACCTTCTTTATC 1121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505921777630320