Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq82235 107 3e-18 >seq82235 Length=6640 Score = 107 bits (118), Expect = 3e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGC-ATCCTTTCCGAGTGCACTCACCGGAGCCGA 50193 ||||| | |||||| | |||||||| || || || ||| ||| | || || ||||| Sbjct 4795 TGGCCGCTGGAGTATGTCATCTACACTGCCATACTG-CCGGCTGCTGTGACGGGCGCCGA 4853 Query 50194 TTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCG 50253 | | |||| ||||| | |||||||||||||| | |||||||| || || ||||||| Sbjct 4854 TGTTGCCATTTTCGCCTCCTGCTTTGCCTACATCTCGGATGTGTCAACGTTGAAGAATCG 4913 Query 50254 CACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGC 50313 |||||| || || ||| ||||||| ||| ||||| | ||||| || ||||| || Sbjct 4914 CACGCTGCGCGTCACCATATTGGATGTGTGCTATTTGAGCGCCATGCCCACGGGTGTAGC 4973 Query 50314 GATCGGTA 50321 | | |||| Sbjct 4974 GCTGGGTA 4981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739462208160760