Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq74067 107 3e-18 seq31472 100 5e-16 seq36071 98.7 2e-15 >seq74067 Length=10880 Score = 107 bits (118), Expect = 3e-18 Identities = 95/116 (82%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 271705 AACATAAAAGAGTAGCCGAAGCTACTCTTTAGAATATGGCTCCGTGACCTGGACTCGAAC 271764 |||| ||||| |||| | |||| |||| |||| ||||||| ||||||| ||||||| Sbjct 9907 AACAAAAAAGCCTAGCT-ATGCTAGGCTTTTGAATTTGGCTCCTCGACCTGGGCTCGAAC 9849 Query 271765 CAGGGACCCAGTGATTAACAGTCACTTGCT-CTACCGACTGAGCTATCACGGAATT 271819 ||||||||| ||||||||||||| |||| ||||| ||||||||||| |||||| Sbjct 9848 CAGGGACCCCTTGATTAACAGTCAAGTGCTACTACCAACTGAGCTATCGAGGAATT 9793 >seq31472 Length=15730 Score = 100 bits (110), Expect = 5e-16 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 266715 TAAATTTGGTGCCGCCACTCCGAATCGAACGGAGGACCTACGCATTACAAGTGCGTTGCT 266774 ||||| |||||||| ||||| ||||||||| |||||||||| ||||||||| |||||| Sbjct 9518 TAAATATGGTGCCGACACTCGGAATCGAACTGAGGACCTACTGATTACAAGTCAGTTGCT 9459 Query 266775 CTACCTAGCTGAGCTATAGCGGCGT 266799 ||||| ||||||||||| |||||| Sbjct 9458 CTACC-AGCTGAGCTATGTCGGCGT 9435 >seq36071 Length=11490 Score = 98.7 bits (108), Expect = 2e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 272869 ATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTA 272928 |||||||||||| | ||||||||||| |||||| ||||||||||||| ||||||| Sbjct 8074 ATATGGTGGGCCTTGTTGGACTTGAACCAACGACCACTCGATTATGAGTCGAGTGCTCTA 8133 Query 272929 ACCAACTGAGCTATAGGCCCTT 272950 ||||||||||||| |||||||| Sbjct 8134 ACCAACTGAGCTAAAGGCCCTT 8155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895007881364240